These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
205 related articles for article (PubMed ID: 32938392)
1. GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads. Ahmed N; Qiu TD; Bertels K; Al-Ars Z BMC Bioinformatics; 2020 Sep; 21(Suppl 13):388. PubMed ID: 32938392 [TBL] [Abstract][Full Text] [Related]
3. RepLong: de novo repeat identification using long read sequencing data. Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180 [TBL] [Abstract][Full Text] [Related]
4. Arioc: GPU-accelerated alignment of short bisulfite-treated reads. Wilton R; Li X; Feinberg AP; Szalay AS Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207 [TBL] [Abstract][Full Text] [Related]
6. Improving the sensitivity of long read overlap detection using grouped short k-mer matches. Du N; Chen J; Sun Y BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123 [TBL] [Abstract][Full Text] [Related]
7. A spectral algorithm for fast de novo layout of uncorrected long nanopore reads. Recanati A; Brüls T; d'Aspremont A Bioinformatics; 2017 Oct; 33(20):3188-3194. PubMed ID: 28605450 [TBL] [Abstract][Full Text] [Related]
8. GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. Ahmed N; Lévy J; Ren S; Mushtaq H; Bertels K; Al-Ars Z BMC Bioinformatics; 2019 Oct; 20(1):520. PubMed ID: 31653208 [TBL] [Abstract][Full Text] [Related]
12. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly. Heydari M; Miclotte G; Van de Peer Y; Fostier J BMC Bioinformatics; 2019 Jun; 20(1):298. PubMed ID: 31159722 [TBL] [Abstract][Full Text] [Related]
13. Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach. Bayat A; Deshpande NP; Wilkins MR; Parameswaran S IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(1):334-338. PubMed ID: 30307874 [TBL] [Abstract][Full Text] [Related]
14. MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads. Xiao CL; Chen Y; Xie SQ; Chen KN; Wang Y; Han Y; Luo F; Xie Z Nat Methods; 2017 Nov; 14(11):1072-1074. PubMed ID: 28945707 [TBL] [Abstract][Full Text] [Related]
15. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches. Cherukuri Y; Janga SC BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636 [TBL] [Abstract][Full Text] [Related]
17. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome. Stadermann KB; Weisshaar B; Holtgräwe D BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912 [TBL] [Abstract][Full Text] [Related]
18. Assembly of long error-prone reads using de Bruijn graphs. Lin Y; Yuan J; Kolmogorov M; Shen MW; Chaisson M; Pevzner PA Proc Natl Acad Sci U S A; 2016 Dec; 113(52):E8396-E8405. PubMed ID: 27956617 [TBL] [Abstract][Full Text] [Related]
19. Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing. Sharma A; Jain P; Mahgoub A; Zhou Z; Mahadik K; Chaterji S BMC Bioinformatics; 2022 Jan; 23(1):25. PubMed ID: 34991450 [TBL] [Abstract][Full Text] [Related]
20. Accurate long-read de novo assembly evaluation with Inspector. Chen Y; Zhang Y; Wang AY; Gao M; Chong Z Genome Biol; 2021 Nov; 22(1):312. PubMed ID: 34775997 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]