256 related articles for article (PubMed ID: 32943081)
1. Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs.
Holley G; Melsted P
Genome Biol; 2020 Sep; 21(1):249. PubMed ID: 32943081
[TBL] [Abstract][Full Text] [Related]
2. Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT.
Cracco A; Tomescu AI
Genome Res; 2023 Jul; 33(7):1198-1207. PubMed ID: 37253540
[TBL] [Abstract][Full Text] [Related]
3. Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections.
Khan J; Patro R
Bioinformatics; 2021 Jul; 37(Suppl_1):i177-i186. PubMed ID: 34252958
[TBL] [Abstract][Full Text] [Related]
4. deBGR: an efficient and near-exact representation of the weighted de Bruijn graph.
Pandey P; Bender MA; Johnson R; Patro R
Bioinformatics; 2017 Jul; 33(14):i133-i141. PubMed ID: 28881995
[TBL] [Abstract][Full Text] [Related]
5. Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs.
Kundeti VK; Rajasekaran S; Dinh H; Vaughn M; Thapar V
BMC Bioinformatics; 2010 Nov; 11():560. PubMed ID: 21078174
[TBL] [Abstract][Full Text] [Related]
6. StLiter: A Novel Algorithm to Iteratively Build the Compacted de Bruijn Graph From Many Complete Genomes.
Yu C; Mao K; Zhao Y; Chang C; Wang G
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(4):2471-2483. PubMed ID: 33630738
[TBL] [Abstract][Full Text] [Related]
7. Compacting de Bruijn graphs from sequencing data quickly and in low memory.
Chikhi R; Limasset A; Medvedev P
Bioinformatics; 2016 Jun; 32(12):i201-i208. PubMed ID: 27307618
[TBL] [Abstract][Full Text] [Related]
8. A space and time-efficient index for the compacted colored de Bruijn graph.
Almodaresi F; Sarkar H; Srivastava A; Patro R
Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
[TBL] [Abstract][Full Text] [Related]
9. Compression algorithm for colored de Bruijn graphs.
Rahman A; Dufresne Y; Medvedev P
Algorithms Mol Biol; 2024 May; 19(1):20. PubMed ID: 38797858
[TBL] [Abstract][Full Text] [Related]
10. Constructing small genome graphs via string compression.
Qiu Y; Kingsford C
Bioinformatics; 2021 Jul; 37(Suppl_1):i205-i213. PubMed ID: 34252955
[TBL] [Abstract][Full Text] [Related]
11. Building large updatable colored de Bruijn graphs via merging.
Muggli MD; Alipanahi B; Boucher C
Bioinformatics; 2019 Jul; 35(14):i51-i60. PubMed ID: 31510647
[TBL] [Abstract][Full Text] [Related]
12. TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes.
Minkin I; Pham S; Medvedev P
Bioinformatics; 2017 Dec; 33(24):4024-4032. PubMed ID: 27659452
[TBL] [Abstract][Full Text] [Related]
13. Compression Algorithm for Colored de Bruijn Graphs.
Rahman A; Dufresne Y; Medvedev P
Lebniz Int Proc Inform; 2023 Sep; 273():. PubMed ID: 38712341
[TBL] [Abstract][Full Text] [Related]
14. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW
BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142
[TBL] [Abstract][Full Text] [Related]
15. BlastFrost: fast querying of 100,000s of bacterial genomes in Bifrost graphs.
Luhmann N; Holley G; Achtman M
Genome Biol; 2021 Jan; 22(1):30. PubMed ID: 33430919
[TBL] [Abstract][Full Text] [Related]
16. On the representation of de Bruijn graphs.
Chikhi R; Limasset A; Jackman S; Simpson JT; Medvedev P
J Comput Biol; 2015 May; 22(5):336-52. PubMed ID: 25629448
[TBL] [Abstract][Full Text] [Related]
17. Integrating long-range connectivity information into de Bruijn graphs.
Turner I; Garimella KV; Iqbal Z; McVean G
Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215
[TBL] [Abstract][Full Text] [Related]
18. deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph.
Guo H; Fu Y; Gao Y; Li J; Wang Y; Liu B
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2157-2166. PubMed ID: 31056509
[TBL] [Abstract][Full Text] [Related]
19. Succinct colored de Bruijn graphs.
Muggli MD; Bowe A; Noyes NR; Morley PS; Belk KE; Raymond R; Gagie T; Puglisi SJ; Boucher C
Bioinformatics; 2017 Oct; 33(20):3181-3187. PubMed ID: 28200001
[TBL] [Abstract][Full Text] [Related]
20. Meta-colored compacted de Bruijn graphs.
Pibiri GE; Fan J; Patro R
bioRxiv; 2023 Nov; ():. PubMed ID: 37546988
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]