425 related articles for article (PubMed ID: 32963001)
1. Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax).
Dueholm MS; Andersen KS; McIlroy SJ; Kristensen JM; Yashiro E; Karst SM; Albertsen M; Nielsen PH
mBio; 2020 Sep; 11(5):. PubMed ID: 32963001
[TBL] [Abstract][Full Text] [Related]
2. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
[TBL] [Abstract][Full Text] [Related]
3. Application of ecosystem-specific reference databases for increased taxonomic resolution in soil microbial profiling.
Overgaard CK; Tao K; Zhang S; Christensen BT; Blahovska Z; Radutoiu S; Kelly S; Dueholm MKD
Front Microbiol; 2022; 13():942396. PubMed ID: 36406450
[TBL] [Abstract][Full Text] [Related]
4. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
Schloss PD
mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
[TBL] [Abstract][Full Text] [Related]
5. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
[TBL] [Abstract][Full Text] [Related]
6. MiDAS 3: An ecosystem-specific reference database, taxonomy and knowledge platform for activated sludge and anaerobic digesters reveals species-level microbiome composition of activated sludge.
Nierychlo M; Andersen KS; Xu Y; Green N; Jiang C; Albertsen M; Dueholm MS; Nielsen PH
Water Res; 2020 Sep; 182():115955. PubMed ID: 32777640
[TBL] [Abstract][Full Text] [Related]
7. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
Xue Z; Kable ME; Marco ML
mSphere; 2018 Oct; 3(5):. PubMed ID: 30333179
[TBL] [Abstract][Full Text] [Related]
8. Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets.
F Escapa I; Huang Y; Chen T; Lin M; Kokaras A; Dewhirst FE; Lemon KP
Microbiome; 2020 May; 8(1):65. PubMed ID: 32414415
[TBL] [Abstract][Full Text] [Related]
9. BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities.
Daisley BA; Reid G
mSystems; 2021 Apr; 6(2):. PubMed ID: 33824193
[TBL] [Abstract][Full Text] [Related]
10. MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants.
Dueholm MKD; Nierychlo M; Andersen KS; Rudkjøbing V; Knutsson S; ; Albertsen M; Nielsen PH
Nat Commun; 2022 Apr; 13(1):1908. PubMed ID: 35393411
[TBL] [Abstract][Full Text] [Related]
11. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
[TBL] [Abstract][Full Text] [Related]
12. Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution.
Matsuo Y; Komiya S; Yasumizu Y; Yasuoka Y; Mizushima K; Takagi T; Kryukov K; Fukuda A; Morimoto Y; Naito Y; Okada H; Bono H; Nakagawa S; Hirota K
BMC Microbiol; 2021 Jan; 21(1):35. PubMed ID: 33499799
[TBL] [Abstract][Full Text] [Related]
13. GSR-DB: a manually curated and optimized taxonomical database for 16S rRNA amplicon analysis.
Molano L-AG; Vega-Abellaneda S; Manichanh C
mSystems; 2024 Feb; 9(2):e0095023. PubMed ID: 38189256
[TBL] [Abstract][Full Text] [Related]
14. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
15. Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats.
Zhang W; Fan X; Shi H; Li J; Zhang M; Zhao J; Su X
Microbiol Spectr; 2023 Jun; 11(3):e0056323. PubMed ID: 37102867
[TBL] [Abstract][Full Text] [Related]
16. High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution.
Callahan BJ; Wong J; Heiner C; Oh S; Theriot CM; Gulati AS; McGill SK; Dougherty MK
Nucleic Acids Res; 2019 Oct; 47(18):e103. PubMed ID: 31269198
[TBL] [Abstract][Full Text] [Related]
17. Sediment-associated microbial community profiling: sample pre-processing through sequential membrane filtration for 16S rRNA amplicon sequencing.
Serrana JM; Watanabe K
BMC Microbiol; 2022 Jan; 22(1):33. PubMed ID: 35057747
[TBL] [Abstract][Full Text] [Related]
18. Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database.
Ritari J; Salojärvi J; Lahti L; de Vos WM
BMC Genomics; 2015 Dec; 16():1056. PubMed ID: 26651617
[TBL] [Abstract][Full Text] [Related]
19. Optimization and Evaluation of the 30S-S11 rRNA Gene for Taxonomic Profiling of Oral Streptococci.
O'Connell LM; Blouin T; Soule A; Burne RA; Nascimento MM; Richards VP
Appl Environ Microbiol; 2022 Jul; 88(13):e0045322. PubMed ID: 35730938
[TBL] [Abstract][Full Text] [Related]
20. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
