239 related articles for article (PubMed ID: 32967423)
1. Spritz: A Proteogenomic Database Engine.
Cesnik AJ; Miller RM; Ibrahim K; Lu L; Millikin RJ; Shortreed MR; Frey BL; Smith LM
J Proteome Res; 2021 Apr; 20(4):1826-1834. PubMed ID: 32967423
[TBL] [Abstract][Full Text] [Related]
2. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry.
Chen W; Liu X
J Proteome Res; 2021 Jan; 20(1):261-269. PubMed ID: 33183009
[TBL] [Abstract][Full Text] [Related]
3. Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy.
Cesnik AJ; Shortreed MR; Sheynkman GM; Frey BL; Smith LM
J Proteome Res; 2016 Mar; 15(3):800-8. PubMed ID: 26704769
[TBL] [Abstract][Full Text] [Related]
4. Characterization of Proteoform Post-Translational Modifications by Top-Down and Bottom-Up Mass Spectrometry in Conjunction with Annotations.
Chen W; Ding Z; Zang Y; Liu X
J Proteome Res; 2023 Oct; 22(10):3178-3189. PubMed ID: 37728997
[TBL] [Abstract][Full Text] [Related]
5. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.
Schaffer LV; Millikin RJ; Shortreed MR; Scalf M; Smith LM
J Proteome Res; 2020 Aug; 19(8):3510-3517. PubMed ID: 32584579
[TBL] [Abstract][Full Text] [Related]
6. Proteomic variations of esophageal squamous cell carcinoma revealed by combining RNA-seq proteogenomics and G-PTM search strategy.
Ramesh P; Nagarajan V; Khanchandani V; Desai VK; Niranjan V
Heliyon; 2020 Aug; 6(8):e04813. PubMed ID: 32913912
[TBL] [Abstract][Full Text] [Related]
7. Characterization of proteoform post-translational modifications by top-down and bottom-up mass spectrometry in conjunction with UniProt annotations.
Chen W; Ding Z; Zang Y; Liu X
bioRxiv; 2023 Apr; ():. PubMed ID: 37066296
[TBL] [Abstract][Full Text] [Related]
8. Proteoform Analysis and Construction of Proteoform Families in Proteoform Suite.
Schaffer LV; Shortreed MR; Smith LM
Methods Mol Biol; 2022; 2500():67-81. PubMed ID: 35657588
[TBL] [Abstract][Full Text] [Related]
9. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database.
Dai Y; Buxton KE; Schaffer LV; Miller RM; Millikin RJ; Scalf M; Frey BL; Shortreed MR; Smith LM
J Proteome Res; 2019 Oct; 18(10):3671-3680. PubMed ID: 31479276
[TBL] [Abstract][Full Text] [Related]
10. Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.
Müller SA; Findeiß S; Pernitzsch SR; Wissenbach DK; Stadler PF; Hofacker IL; von Bergen M; Kalkhof S
J Proteomics; 2013 Jun; 86():27-42. PubMed ID: 23665149
[TBL] [Abstract][Full Text] [Related]
11. Characterization of Proteoforms with Unknown Post-translational Modifications Using the MIScore.
Kou Q; Zhu B; Wu S; Ansong C; Tolić N; Paša-Tolić L; Liu X
J Proteome Res; 2016 Aug; 15(8):2422-32. PubMed ID: 27291504
[TBL] [Abstract][Full Text] [Related]
12. ProSight Annotator: Complete control and customization of protein entries in UniProt XML files.
Greer JB; Early BP; Durbin KR; Patrie SM; Thomas PM; Kelleher NL; LeDuc RD; Fellers RT
Proteomics; 2022 Jun; 22(11-12):e2100209. PubMed ID: 35286768
[TBL] [Abstract][Full Text] [Related]
13. PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms.
Verbruggen S; Ndah E; Van Criekinge W; Gessulat S; Kuster B; Wilhelm M; Van Damme P; Menschaert G
Mol Cell Proteomics; 2019 Aug; 18(8 suppl 1):S126-S140. PubMed ID: 31040227
[TBL] [Abstract][Full Text] [Related]
14. Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus.
Shortreed MR; Millikin RJ; Liu L; Rolfs Z; Miller RM; Schaffer LV; Frey BL; Smith LM
J Proteome Res; 2021 Apr; 20(4):1997-2004. PubMed ID: 33683901
[TBL] [Abstract][Full Text] [Related]
15. PIPI2: Sensitive Tag-Based Database Search to Identify Peptides with Multiple Post-translational Modifications.
Lai S; Zhao P; Zhou C; Li N; Yu W
J Proteome Res; 2024 Jun; 23(6):1960-1969. PubMed ID: 38770571
[TBL] [Abstract][Full Text] [Related]
16. SpectroGene: A Tool for Proteogenomic Annotations Using Top-Down Spectra.
Kolmogorov M; Liu X; Pevzner PA
J Proteome Res; 2016 Jan; 15(1):144-51. PubMed ID: 26629978
[TBL] [Abstract][Full Text] [Related]
17. A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis.
Dai Y; Millikin RJ; Rolfs Z; Shortreed MR; Smith LM
J Proteome Res; 2022 Nov; 21(11):2609-2618. PubMed ID: 36206157
[TBL] [Abstract][Full Text] [Related]
18. Evaluation of bottom-up and top-down mass spectrum identifications with different customized protein sequences databases.
Li Z; He B; Feng W
Bioinformatics; 2020 Feb; 36(4):1030-1036. PubMed ID: 31584612
[TBL] [Abstract][Full Text] [Related]
19. False discovery rate: the Achilles' heel of proteogenomics.
Aggarwal S; Raj A; Kumar D; Dash D; Yadav AK
Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35534181
[TBL] [Abstract][Full Text] [Related]
20. Pool-seq driven proteogenomic database for Group G Streptococcus.
Weldatsadik RG; Datta N; Kolmeder C; Vuopio J; Kere J; Wilkman SV; Flatt JW; Vuento R; Haapasalo KJ; Keskitalo S; Varjosalo M; Jokiranta TS
J Proteomics; 2019 Jun; 201():84-92. PubMed ID: 31015036
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
