239 related articles for article (PubMed ID: 32967423)
21. FusionPro, a Versatile Proteogenomic Tool for Identification of Novel Fusion Transcripts and Their Potential Translation Products in Cancer Cells.
Kim CY; Na K; Park S; Jeong SK; Cho JY; Shin H; Lee MJ; Han G; Paik YK
Mol Cell Proteomics; 2019 Aug; 18(8):1651-1668. PubMed ID: 31208993
[TBL] [Abstract][Full Text] [Related]
22. Enhanced Global Post-translational Modification Discovery with MetaMorpheus.
Solntsev SK; Shortreed MR; Frey BL; Smith LM
J Proteome Res; 2018 May; 17(5):1844-1851. PubMed ID: 29578715
[TBL] [Abstract][Full Text] [Related]
23. Proteogenomics: From next-generation sequencing (NGS) and mass spectrometry-based proteomics to precision medicine.
Ang MY; Low TY; Lee PY; Wan Mohamad Nazarie WF; Guryev V; Jamal R
Clin Chim Acta; 2019 Nov; 498():38-46. PubMed ID: 31421119
[TBL] [Abstract][Full Text] [Related]
24. PTMSearchPlus: software tool for automated protein identification and post-translational modification characterization by integrating accurate intact protein mass and bottom-up mass spectrometric data searches.
Kertesz V; Connelly HM; Erickson BK; Hettich RL
Anal Chem; 2009 Oct; 81(20):8387-95. PubMed ID: 19775152
[TBL] [Abstract][Full Text] [Related]
25. The Plant PTM Viewer, a central resource for exploring plant protein modifications.
Willems P; Horne A; Van Parys T; Goormachtig S; De Smet I; Botzki A; Van Breusegem F; Gevaert K
Plant J; 2019 Aug; 99(4):752-762. PubMed ID: 31004550
[TBL] [Abstract][Full Text] [Related]
26. Cross-Species PTM Mapping from Phosphoproteomic Data.
Chaudhuri R; Yang JY
Methods Mol Biol; 2017; 1558():459-469. PubMed ID: 28150252
[TBL] [Abstract][Full Text] [Related]
27. Personalized Proteome: Comparing Proteogenomics and Open Variant Search Approaches for Single Amino Acid Variant Detection.
Salz R; Bouwmeester R; Gabriels R; Degroeve S; Martens L; Volders PJ; 't Hoen PAC
J Proteome Res; 2021 Jun; 20(6):3353-3364. PubMed ID: 33998808
[TBL] [Abstract][Full Text] [Related]
28. Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database.
Dai Y; Shortreed MR; Scalf M; Frey BL; Cesnik AJ; Solntsev S; Schaffer LV; Smith LM
J Proteome Res; 2017 Nov; 16(11):4156-4165. PubMed ID: 28968100
[TBL] [Abstract][Full Text] [Related]
29. Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics.
Lobas AA; Pyatnitskiy MA; Chernobrovkin AL; Ilina IY; Karpov DS; Solovyeva EM; Kuznetsova KG; Ivanov MV; Lyssuk EY; Kliuchnikova AA; Voronko OE; Larin SS; Zubarev RA; Gorshkov MV; Moshkovskii SA
J Proteome Res; 2018 May; 17(5):1801-1811. PubMed ID: 29619825
[TBL] [Abstract][Full Text] [Related]
30. STRAP PTM: Software Tool for Rapid Annotation and Differential Comparison of Protein Post-Translational Modifications.
Spencer JL; Bhatia VN; Whelan SA; Costello CE; McComb ME
Curr Protoc Bioinformatics; 2013 Dec; 44(1322):13.22.1-36. PubMed ID: 25422678
[TBL] [Abstract][Full Text] [Related]
31. Identification of ultramodified proteins using top-down tandem mass spectra.
Liu X; Hengel S; Wu S; Tolić N; Pasa-Tolić L; Pevzner PA
J Proteome Res; 2013 Dec; 12(12):5830-8. PubMed ID: 24188097
[TBL] [Abstract][Full Text] [Related]
32. Web and database software for identification of intact proteins using "top down" mass spectrometry.
Taylor GK; Kim YB; Forbes AJ; Meng F; McCarthy R; Kelleher NL
Anal Chem; 2003 Aug; 75(16):4081-6. PubMed ID: 14632120
[TBL] [Abstract][Full Text] [Related]
33. Software eyes for protein post-translational modifications.
Na S; Paek E
Mass Spectrom Rev; 2015; 34(2):133-47. PubMed ID: 24889695
[TBL] [Abstract][Full Text] [Related]
34. Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys.
Proffitt JM; Glenn J; Cesnik AJ; Jadhav A; Shortreed MR; Smith LM; Kavanagh K; Cox LA; Olivier M
BMC Genomics; 2017 Nov; 18(1):877. PubMed ID: 29132314
[TBL] [Abstract][Full Text] [Related]
35. Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation.
Sheynkman GM; Shortreed MR; Cesnik AJ; Smith LM
Annu Rev Anal Chem (Palo Alto Calif); 2016 Jun; 9(1):521-45. PubMed ID: 27049631
[TBL] [Abstract][Full Text] [Related]
36. Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring.
Ma CW; Lam H
J Proteome Res; 2014 May; 13(5):2262-71. PubMed ID: 24661115
[TBL] [Abstract][Full Text] [Related]
37. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
[TBL] [Abstract][Full Text] [Related]
38. Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq.
Sheynkman GM; Shortreed MR; Frey BL; Smith LM
Mol Cell Proteomics; 2013 Aug; 12(8):2341-53. PubMed ID: 23629695
[TBL] [Abstract][Full Text] [Related]
39. ProteomeGenerator: A Framework for Comprehensive Proteomics Based on de Novo Transcriptome Assembly and High-Accuracy Peptide Mass Spectral Matching.
Cifani P; Dhabaria A; Chen Z; Yoshimi A; Kawaler E; Abdel-Wahab O; Poirier JT; Kentsis A
J Proteome Res; 2018 Nov; 17(11):3681-3692. PubMed ID: 30295032
[TBL] [Abstract][Full Text] [Related]
40. Unrestrictive identification of post-translational modifications through peptide mass spectrometry.
Tanner S; Pevzner PA; Bafna V
Nat Protoc; 2006; 1(1):67-72. PubMed ID: 17406213
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
