209 related articles for article (PubMed ID: 32985524)
1. SV-HotSpot: detection and visualization of hotspots targeted by structural variants associated with gene expression.
Eteleeb AM; Quigley DA; Zhao SG; Pham D; Yang R; Dehm SM; Luo J; Feng FY; Dang HX; Maher CA
Sci Rep; 2020 Sep; 10(1):15890. PubMed ID: 32985524
[TBL] [Abstract][Full Text] [Related]
2. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
Zhang Y; Chen F; Creighton CJ
BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
[TBL] [Abstract][Full Text] [Related]
3. nanotatoR: a tool for enhanced annotation of genomic structural variants.
Bhattacharya S; Barseghyan H; Délot EC; Vilain E
BMC Genomics; 2021 Jan; 22(1):10. PubMed ID: 33407088
[TBL] [Abstract][Full Text] [Related]
4. Fine-Scale Characterization of Genomic Structural Variation in the Human Genome Reveals Adaptive and Biomedically Relevant Hotspots.
Lin YL; Gokcumen O
Genome Biol Evol; 2019 Apr; 11(4):1136-1151. PubMed ID: 30887040
[TBL] [Abstract][Full Text] [Related]
5. Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent
Ooi WF; Nargund AM; Lim KJ; Zhang S; Xing M; Mandoli A; Lim JQ; Ho SWT; Guo Y; Yao X; Lin SJ; Nandi T; Xu C; Ong X; Lee M; Tan AL; Lam YN; Teo JX; Kaneda A; White KP; Lim WK; Rozen SG; Teh BT; Li S; Skanderup AJ; Tan P
Gut; 2020 Jun; 69(6):1039-1052. PubMed ID: 31542774
[TBL] [Abstract][Full Text] [Related]
6. Detection of genomic structural variations in Guizhou indigenous pigs and the comparison with other breeds.
Liu C; Ran X; Wang J; Li S; Liu J
PLoS One; 2018; 13(3):e0194282. PubMed ID: 29558483
[TBL] [Abstract][Full Text] [Related]
7. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.
Zhao X; Collins RL; Lee WP; Weber AM; Jun Y; Zhu Q; Weisburd B; Huang Y; Audano PA; Wang H; Walker M; Lowther C; Fu J; ; Gerstein MB; Devine SE; Marschall T; Korbel JO; Eichler EE; Chaisson MJP; Lee C; Mills RE; Brand H; Talkowski ME
Am J Hum Genet; 2021 May; 108(5):919-928. PubMed ID: 33789087
[TBL] [Abstract][Full Text] [Related]
8. Impact of Rare Structural Variant Events in Newly Diagnosed Multiple Myeloma.
Chojnacka M; Diamond B; Ziccheddu B; Rustad E; Maclachlan K; Papadimitriou M; Boyle EM; Blaney P; Usmani S; Morgan G; Landgren O; Maura F
Clin Cancer Res; 2024 Feb; 30(3):575-585. PubMed ID: 37939148
[TBL] [Abstract][Full Text] [Related]
9. Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing.
Kosugi S; Momozawa Y; Liu X; Terao C; Kubo M; Kamatani Y
Genome Biol; 2019 Jun; 20(1):117. PubMed ID: 31159850
[TBL] [Abstract][Full Text] [Related]
10. Genomic structural variations lead to dysregulation of important coding and non-coding RNA species in dilated cardiomyopathy.
Haas J; Mester S; Lai A; Frese KS; Sedaghat-Hamedani F; Kayvanpour E; Rausch T; Nietsch R; Boeckel JN; Carstensen A; Völkers M; Dietrich C; Pils D; Amr A; Holzer DB; Martins Bordalo D; Oehler D; Weis T; Mereles D; Buss S; Riechert E; Wirsz E; Wuerstle M; Korbel JO; Keller A; Katus HA; Posch AE; Meder B
EMBO Mol Med; 2018 Jan; 10(1):107-120. PubMed ID: 29138229
[TBL] [Abstract][Full Text] [Related]
11. PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform.
Wang Y; Ling Y; Gong J; Zhao X; Zhou H; Xie B; Lou H; Zhuang X; Jin L; ; Fan S; Zhang G; Xu S
Nucleic Acids Res; 2023 Jan; 51(D1):D1109-D1116. PubMed ID: 36243989
[TBL] [Abstract][Full Text] [Related]
12. SVPV: a structural variant prediction viewer for paired-end sequencing datasets.
Munro JE; Dunwoodie SL; Giannoulatou E
Bioinformatics; 2017 Jul; 33(13):2032-2033. PubMed ID: 28334120
[TBL] [Abstract][Full Text] [Related]
13. StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.
Sharo AG; Hu Z; Sunyaev SR; Brenner SE
Am J Hum Genet; 2022 Feb; 109(2):195-209. PubMed ID: 35032432
[TBL] [Abstract][Full Text] [Related]
14. Toward the functional interpretation of somatic structural variations: bulk- and single-cell approaches.
Yi D; Nam JW; Jeong H
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37587831
[TBL] [Abstract][Full Text] [Related]
15. Visualization tools for human structural variations identified by whole-genome sequencing.
Yokoyama TT; Kasahara M
J Hum Genet; 2020 Jan; 65(1):49-60. PubMed ID: 31666648
[TBL] [Abstract][Full Text] [Related]
16. Rearrangement-mediated cis-regulatory alterations in advanced patient tumors reveal interactions with therapy.
Zhang Y; Chen F; Pleasance E; Williamson L; Grisdale CJ; Titmuss E; Laskin J; Jones SJM; Cortes-Ciriano I; Marra MA; Creighton CJ
Cell Rep; 2021 Nov; 37(7):110023. PubMed ID: 34788622
[TBL] [Abstract][Full Text] [Related]
17. Prioritization of genes driving congenital phenotypes of patients with de novo genomic structural variants.
Middelkamp S; Vlaar JM; Giltay J; Korzelius J; Besselink N; Boymans S; Janssen R; de la Fonteijne L; van Binsbergen E; van Roosmalen MJ; Hochstenbach R; Giachino D; Talkowski ME; Kloosterman WP; Cuppen E
Genome Med; 2019 Dec; 11(1):79. PubMed ID: 31801603
[TBL] [Abstract][Full Text] [Related]
18. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
[TBL] [Abstract][Full Text] [Related]
19. NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data.
Linderman MD; Paudyal C; Shakeel M; Kelley W; Bashir A; Gelb BD
Gigascience; 2021 Jul; 10(7):. PubMed ID: 34195837
[TBL] [Abstract][Full Text] [Related]
20. Long-Read Sequencing Improves the Detection of Structural Variations Impacting Complex Non-Coding Elements of the Genome.
Begum G; Albanna A; Bankapur A; Nassir N; Tambi R; Berdiev BK; Akter H; Karuvantevida N; Kellam B; Alhashmi D; Sung WWL; Thiruvahindrapuram B; Alsheikh-Ali A; Scherer SW; Uddin M
Int J Mol Sci; 2021 Feb; 22(4):. PubMed ID: 33669700
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
