These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. A systematic comparison of human mitochondrial genome assembly tools. Mahar NS; Satyam R; Sundar D; Gupta I BMC Bioinformatics; 2023 Sep; 24(1):341. PubMed ID: 37704952 [TBL] [Abstract][Full Text] [Related]
3. Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data. Soorni A; Haak D; Zaitlin D; Bombarely A BMC Genomics; 2017 Jan; 18(1):49. PubMed ID: 28061749 [TBL] [Abstract][Full Text] [Related]
4. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case. Wang W; Schalamun M; Morales-Suarez A; Kainer D; Schwessinger B; Lanfear R BMC Genomics; 2018 Dec; 19(1):977. PubMed ID: 30594129 [TBL] [Abstract][Full Text] [Related]
6. CLAW: An automated Snakemake workflow for the assembly of chloroplast genomes from long-read data. Phillips AL; Ferguson S; Burton RA; Watson-Haigh NS PLoS Comput Biol; 2024 Feb; 20(2):e1011870. PubMed ID: 38335225 [TBL] [Abstract][Full Text] [Related]
7. The complete chloroplast genome of greater duckweed (Spirodela polyrhiza 7498) using PacBio long reads: insights into the chloroplast evolution and transcription regulation. Zhang Y; An D; Li C; Zhao Z; Wang W BMC Genomics; 2020 Jan; 21(1):76. PubMed ID: 31992185 [TBL] [Abstract][Full Text] [Related]
8. Chloroplast genomes of Rubiaceae: Comparative genomics and molecular phylogeny in subfamily Ixoroideae. Ly SN; Garavito A; De Block P; Asselman P; Guyeux C; Charr JC; Janssens S; Mouly A; Hamon P; Guyot R PLoS One; 2020; 15(4):e0232295. PubMed ID: 32353023 [TBL] [Abstract][Full Text] [Related]
9. Comparison of different annotation tools for characterization of the complete chloroplast genome of Corylus avellana cv Tombul. Kahraman K; Lucas SJ BMC Genomics; 2019 Nov; 20(1):874. PubMed ID: 31747873 [TBL] [Abstract][Full Text] [Related]
10. Methods and Tools for Plant Organelle Genome Sequencing, Assembly, and Downstream Analysis. Sandhya S; Srivastava H; Kaila T; Tyagi A; Gaikwad K Methods Mol Biol; 2020; 2107():49-98. PubMed ID: 31893443 [TBL] [Abstract][Full Text] [Related]
11. Characteristic and Phylogenetic Analysis of the Complete Chloroplast Genomes of Three Medicinal Plants of Schisandraceae. Zhang D; Wang J; Xu L; Xing Y; Zhang T; Li S; Yang Y; Bao G; Ao W; Kang T Biomed Res Int; 2020; 2020():3536761. PubMed ID: 33123569 [No Abstract] [Full Text] [Related]
12. Engineering plastid genomes: methods, tools, and applications in basic research and biotechnology. Bock R Annu Rev Plant Biol; 2015; 66():211-41. PubMed ID: 25494465 [TBL] [Abstract][Full Text] [Related]
13. Comparative genomics of four Liliales families inferred from the complete chloroplast genome sequence of Veratrum patulum O. Loes. (Melanthiaceae). Do HD; Kim JS; Kim JH Gene; 2013 Nov; 530(2):229-35. PubMed ID: 23973725 [TBL] [Abstract][Full Text] [Related]
14. Next-generation technologies to determine plastid genome sequences. Henry RJ; Rice N; Edwards M; Nock CJ Methods Mol Biol; 2014; 1132():39-46. PubMed ID: 24599845 [TBL] [Abstract][Full Text] [Related]
16. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome. Stadermann KB; Weisshaar B; Holtgräwe D BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912 [TBL] [Abstract][Full Text] [Related]
17. High-accuracy de novo assembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy. Li Q; Li Y; Song J; Xu H; Xu J; Zhu Y; Li X; Gao H; Dong L; Qian J; Sun C; Chen S New Phytol; 2014 Dec; 204(4):1041-9. PubMed ID: 25103547 [TBL] [Abstract][Full Text] [Related]
18. Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq. Osuna-Mascaró C; Rubio de Casas R; Perfectti F Sci Rep; 2018 Nov; 8(1):17404. PubMed ID: 30479362 [TBL] [Abstract][Full Text] [Related]
19. Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus. Raubeson LA; Peery R; Chumley TW; Dziubek C; Fourcade HM; Boore JL; Jansen RK BMC Genomics; 2007 Jun; 8():174. PubMed ID: 17573971 [TBL] [Abstract][Full Text] [Related]
20. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Dierckxsens N; Mardulyn P; Smits G Nucleic Acids Res; 2017 Feb; 45(4):e18. PubMed ID: 28204566 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]