210 related articles for article (PubMed ID: 32988407)
1. Functional signatures of evolutionarily young CTCF binding sites.
Azazi D; Mudge JM; Odom DT; Flicek P
BMC Biol; 2020 Sep; 18(1):132. PubMed ID: 32988407
[TBL] [Abstract][Full Text] [Related]
2. Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains.
Kentepozidou E; Aitken SJ; Feig C; Stefflova K; Ibarra-Soria X; Odom DT; Roller M; Flicek P
Genome Biol; 2020 Jan; 21(1):5. PubMed ID: 31910870
[TBL] [Abstract][Full Text] [Related]
3. The murine IgH locus contains a distinct DNA sequence motif for the chromatin regulatory factor CTCF.
Ciccone DN; Namiki Y; Chen C; Morshead KB; Wood AL; Johnston CM; Morris JW; Wang Y; Sadreyev R; Corcoran AE; Matthews AGW; Oettinger MA
J Biol Chem; 2019 Sep; 294(37):13580-13592. PubMed ID: 31285261
[TBL] [Abstract][Full Text] [Related]
4. Repeat associated mechanisms of genome evolution and function revealed by the
Thybert D; Roller M; Navarro FCP; Fiddes I; Streeter I; Feig C; Martin-Galvez D; Kolmogorov M; Janoušek V; Akanni W; Aken B; Aldridge S; Chakrapani V; Chow W; Clarke L; Cummins C; Doran A; Dunn M; Goodstadt L; Howe K; Howell M; Josselin AA; Karn RC; Laukaitis CM; Jingtao L; Martin F; Muffato M; Nachtweide S; Quail MA; Sisu C; Stanke M; Stefflova K; Van Oosterhout C; Veyrunes F; Ward B; Yang F; Yazdanifar G; Zadissa A; Adams DJ; Brazma A; Gerstein M; Paten B; Pham S; Keane TM; Odom DT; Flicek P
Genome Res; 2018 Apr; 28(4):448-459. PubMed ID: 29563166
[TBL] [Abstract][Full Text] [Related]
5. The ChAHP Complex Counteracts Chromatin Looping at CTCF Sites that Emerged from SINE Expansions in Mouse.
Kaaij LJT; Mohn F; van der Weide RH; de Wit E; Bühler M
Cell; 2019 Sep; 178(6):1437-1451.e14. PubMed ID: 31491387
[TBL] [Abstract][Full Text] [Related]
6. Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome.
Ni X; Zhang YE; Nègre N; Chen S; Long M; White KP
PLoS Biol; 2012; 10(11):e1001420. PubMed ID: 23139640
[TBL] [Abstract][Full Text] [Related]
7. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
Front Immunol; 2018; 9():425. PubMed ID: 29593713
[TBL] [Abstract][Full Text] [Related]
8. Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.
Khoury A; Achinger-Kawecka J; Bert SA; Smith GC; French HJ; Luu PL; Peters TJ; Du Q; Parry AJ; Valdes-Mora F; Taberlay PC; Stirzaker C; Statham AL; Clark SJ
Nat Commun; 2020 Jan; 11(1):54. PubMed ID: 31911579
[TBL] [Abstract][Full Text] [Related]
9. CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features.
Essien K; Vigneau S; Apreleva S; Singh LN; Bartolomei MS; Hannenhalli S
Genome Biol; 2009; 10(11):R131. PubMed ID: 19922652
[TBL] [Abstract][Full Text] [Related]
10. Multi-feature clustering of CTCF binding creates robustness for loop extrusion blocking and Topologically Associating Domain boundaries.
Chang LH; Ghosh S; Papale A; Luppino JM; Miranda M; Piras V; Degrouard J; Edouard J; Poncelet M; Lecouvreur N; Bloyer S; Leforestier A; Joyce EF; Holcman D; Noordermeer D
Nat Commun; 2023 Sep; 14(1):5615. PubMed ID: 37699887
[TBL] [Abstract][Full Text] [Related]
11. Prediction and comparative analysis of CTCF binding sites based on a first principle approach.
Oiwa NN; Li K; Cordeiro CE; Heermann DW
Phys Biol; 2022 Apr; 19(3):. PubMed ID: 35290214
[TBL] [Abstract][Full Text] [Related]
12. The effect of CTCF binding sites destruction by CRISPR/Cas9 on transcription of metallothionein gene family in liver hepatocellular carcinoma.
Gong W; Liu Y; Qu H; Liu A; Sun P; Wang X
Biochem Biophys Res Commun; 2019 Mar; 510(4):530-538. PubMed ID: 30738580
[TBL] [Abstract][Full Text] [Related]
13. CTCF binding landscape in jawless fish with reference to Hox cluster evolution.
Kadota M; Hara Y; Tanaka K; Takagi W; Tanegashima C; Nishimura O; Kuraku S
Sci Rep; 2017 Jul; 7(1):4957. PubMed ID: 28694486
[TBL] [Abstract][Full Text] [Related]
14. Functional and genetic determinants of mutation rate variability in regulatory elements of cancer genomes.
Lee CA; Abd-Rabbo D; Reimand J
Genome Biol; 2021 May; 22(1):133. PubMed ID: 33941236
[TBL] [Abstract][Full Text] [Related]
15. Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits.
Wang M; Hancock TP; Chamberlain AJ; Vander Jagt CJ; Pryce JE; Cocks BG; Goddard ME; Hayes BJ
BMC Genomics; 2018 May; 19(1):395. PubMed ID: 29793448
[TBL] [Abstract][Full Text] [Related]
16. A tour of 3D genome with a focus on CTCF.
Wang DC; Wang W; Zhang L; Wang X
Semin Cell Dev Biol; 2019 Jun; 90():4-11. PubMed ID: 30031214
[TBL] [Abstract][Full Text] [Related]
17. Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders.
Gómez-Marín C; Tena JJ; Acemel RD; López-Mayorga M; Naranjo S; de la Calle-Mustienes E; Maeso I; Beccari L; Aneas I; Vielmas E; Bovolenta P; Nobrega MA; Carvajal J; Gómez-Skarmeta JL
Proc Natl Acad Sci U S A; 2015 Jun; 112(24):7542-7. PubMed ID: 26034287
[TBL] [Abstract][Full Text] [Related]
18. Multiple CTCF sites cooperate with each other to maintain a TAD for enhancer-promoter interaction in the β-globin locus.
Kang J; Kim YW; Park S; Kang Y; Kim A
FASEB J; 2021 Aug; 35(8):e21768. PubMed ID: 34245617
[TBL] [Abstract][Full Text] [Related]
19. CTCF sites display cell cycle-dependent dynamics in factor binding and nucleosome positioning.
Oomen ME; Hansen AS; Liu Y; Darzacq X; Dekker J
Genome Res; 2019 Feb; 29(2):236-249. PubMed ID: 30655336
[TBL] [Abstract][Full Text] [Related]
20. Accumulation of CTCF-binding sites drives expression divergence between tandemly duplicated genes in humans.
Liao BY; Chang A
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S8. PubMed ID: 24564680
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
