209 related articles for article (PubMed ID: 32993478)
1. TRIP - T cell receptor/immunoglobulin profiler.
Kotouza MT; Gemenetzi K; Galigalidou C; Vlachonikola E; Pechlivanis N; Agathangelidis A; Sandaltzopoulos R; Mitkas PA; Stamatopoulos K; Chatzidimitriou A; Psomopoulos FE;
BMC Bioinformatics; 2020 Sep; 21(1):422. PubMed ID: 32993478
[TBL] [Abstract][Full Text] [Related]
2. Purpose-Built Immunoinformatics for BcR IG/TR Repertoire Data Analysis.
Galigalidou C; Zaragoza-Infante L; Chatzidimitriou A; Stamatopoulos K; Psomopoulos F; Agathangelidis A
Methods Mol Biol; 2022; 2453():585-603. PubMed ID: 35622343
[TBL] [Abstract][Full Text] [Related]
3. IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.
Alamyar E; Duroux P; Lefranc MP; Giudicelli V
Methods Mol Biol; 2012; 882():569-604. PubMed ID: 22665256
[TBL] [Abstract][Full Text] [Related]
4. IG and TR single chain fragment variable (scFv) sequence analysis: a new advanced functionality of IMGT/V-QUEST and IMGT/HighV-QUEST.
Giudicelli V; Duroux P; Kossida S; Lefranc MP
BMC Immunol; 2017 Jun; 18(1):35. PubMed ID: 28651553
[TBL] [Abstract][Full Text] [Related]
5. Antigen Receptor Galaxy: A User-Friendly, Web-Based Tool for Analysis and Visualization of T and B Cell Receptor Repertoire Data.
IJspeert H; van Schouwenburg PA; van Zessen D; Pico-Knijnenburg I; Stubbs AP; van der Burg M
J Immunol; 2017 May; 198(10):4156-4165. PubMed ID: 28416602
[TBL] [Abstract][Full Text] [Related]
6. IMGT/HighV-QUEST Statistical Significance of IMGT Clonotype (AA) Diversity per Gene for Standardized Comparisons of Next Generation Sequencing Immunoprofiles of Immunoglobulins and T Cell Receptors.
Aouinti S; Malouche D; Giudicelli V; Kossida S; Lefranc MP
PLoS One; 2015; 10(11):e0142353. PubMed ID: 26540440
[TBL] [Abstract][Full Text] [Related]
7. ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data.
Schaller S; Weinberger J; Jimenez-Heredia R; Danzer M; Oberbauer R; Gabriel C; Winkler SM
BMC Bioinformatics; 2015 Aug; 16():252. PubMed ID: 26264428
[TBL] [Abstract][Full Text] [Related]
8. IMGT/StatClonotype for Pairwise Evaluation and Visualization of NGS IG and TR IMGT Clonotype (AA) Diversity or Expression from IMGT/HighV-QUEST.
Aouinti S; Giudicelli V; Duroux P; Malouche D; Kossida S; Lefranc MP
Front Immunol; 2016; 7():339. PubMed ID: 27667992
[TBL] [Abstract][Full Text] [Related]
9. Recovering probabilities for nucleotide trimming processes for T cell receptor TRA and TRG V-J junctions analyzed with IMGT tools.
Bleakley K; Lefranc MP; Biau G
BMC Bioinformatics; 2008 Oct; 9():408. PubMed ID: 18831754
[TBL] [Abstract][Full Text] [Related]
10. IMGT/JunctionAnalysis: the first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J JUNCTIONs.
Yousfi Monod M; Giudicelli V; Chaume D; Lefranc MP
Bioinformatics; 2004 Aug; 20 Suppl 1():i379-85. PubMed ID: 15262823
[TBL] [Abstract][Full Text] [Related]
11. IMGT
Giudicelli V; Duroux P; Rollin M; Aouinti S; Folch G; Jabado-Michaloud J; Lefranc MP; Kossida S
Methods Mol Biol; 2022; 2453():477-531. PubMed ID: 35622340
[TBL] [Abstract][Full Text] [Related]
12. IRProfiler - a software toolbox for high throughput immune receptor profiling.
Maramis C; Gkoufas A; Vardi A; Stalika E; Stamatopoulos K; Hatzidimitriou A; Maglaveras N; Chouvarda I
BMC Bioinformatics; 2018 Apr; 19(1):144. PubMed ID: 29669518
[TBL] [Abstract][Full Text] [Related]
13. ASAP - A Webserver for Immunoglobulin-Sequencing Analysis Pipeline.
Avram O; Vaisman-Mentesh A; Yehezkel D; Ashkenazy H; Pupko T; Wine Y
Front Immunol; 2018; 9():1686. PubMed ID: 30105017
[TBL] [Abstract][Full Text] [Related]
14. Using bioinformatics tools for the sequence analysis of immunoglobulins and T cell receptors.
Lefranc MP
Curr Protoc Immunol; 2006 Mar; Appendix 1():Appendix 1W. PubMed ID: 18432961
[TBL] [Abstract][Full Text] [Related]
15. IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences.
Giudicelli V; Duroux P; Ginestoux C; Folch G; Jabado-Michaloud J; Chaume D; Lefranc MP
Nucleic Acids Res; 2006 Jan; 34(Database issue):D781-4. PubMed ID: 16381979
[TBL] [Abstract][Full Text] [Related]
16. IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis.
Giudicelli V; Chaume D; Lefranc MP
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W435-40. PubMed ID: 15215425
[TBL] [Abstract][Full Text] [Related]
17. ImmunoDataAnalyzer: a bioinformatics pipeline for processing barcoded and UMI tagged immunological NGS data.
Vetter J; Schaller S; Heinzel A; Aschauer C; Reindl-Schwaighofer R; Jelencsics K; Hu K; Oberbauer R; Winkler SM
BMC Bioinformatics; 2022 Jan; 23(1):21. PubMed ID: 34991455
[TBL] [Abstract][Full Text] [Related]
18. From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences.
Lane J; Duroux P; Lefranc MP
BMC Bioinformatics; 2010 Apr; 11():223. PubMed ID: 20433708
[TBL] [Abstract][Full Text] [Related]
19. LymAnalyzer: a tool for comprehensive analysis of next generation sequencing data of T cell receptors and immunoglobulins.
Yu Y; Ceredig R; Seoighe C
Nucleic Acids Res; 2016 Feb; 44(4):e31. PubMed ID: 26446988
[TBL] [Abstract][Full Text] [Related]
20. Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study.
Brüggemann M; Kotrová M; Knecht H; Bartram J; Boudjogrha M; Bystry V; Fazio G; Froňková E; Giraud M; Grioni A; Hancock J; Herrmann D; Jiménez C; Krejci A; Moppett J; Reigl T; Salson M; Scheijen B; Schwarz M; Songia S; Svaton M; van Dongen JJM; Villarese P; Wakeman S; Wright G; Cazzaniga G; Davi F; García-Sanz R; Gonzalez D; Groenen PJTA; Hummel M; Macintyre EA; Stamatopoulos K; Pott C; Trka J; Darzentas N; Langerak AW;
Leukemia; 2019 Sep; 33(9):2241-2253. PubMed ID: 31243313
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
