302 related articles for article (PubMed ID: 33001022)
1. Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands.
Maguire F; Jia B; Gray KL; Lau WYV; Beiko RG; Brinkman FSL
Microb Genom; 2020 Oct; 6(10):. PubMed ID: 33001022
[TBL] [Abstract][Full Text] [Related]
2. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.
Beaulaurier J; Zhu S; Deikus G; Mogno I; Zhang XS; Davis-Richardson A; Canepa R; Triplett EW; Faith JJ; Sebra R; Schadt EE; Fang G
Nat Biotechnol; 2018 Jan; 36(1):61-69. PubMed ID: 29227468
[TBL] [Abstract][Full Text] [Related]
3. Evaluating
Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
[TBL] [Abstract][Full Text] [Related]
4. Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation.
Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35298370
[TBL] [Abstract][Full Text] [Related]
5. MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics.
Churcheward B; Millet M; Bihouée A; Fertin G; Chaffron S
mSystems; 2022 Aug; 7(4):e0043222. PubMed ID: 35703559
[TBL] [Abstract][Full Text] [Related]
6. High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method.
Liu L; Wang Y; Che Y; Chen Y; Xia Y; Luo R; Cheng SH; Zheng C; Zhang T
Microbiome; 2020 Nov; 8(1):155. PubMed ID: 33158461
[TBL] [Abstract][Full Text] [Related]
7. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
Chen Z; Grim CJ; Ramachandran P; Meng J
Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
[TBL] [Abstract][Full Text] [Related]
8. The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample.
Meziti A; Rodriguez-R LM; Hatt JK; Peña-Gonzalez A; Levy K; Konstantinidis KT
Appl Environ Microbiol; 2021 Feb; 87(6):. PubMed ID: 33452027
[TBL] [Abstract][Full Text] [Related]
9. Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking.
Wu Z; Wang Y; Zeng J; Zhou Y
BMC Genomics; 2022 Nov; 23(1):746. PubMed ID: 36352370
[TBL] [Abstract][Full Text] [Related]
10. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
[TBL] [Abstract][Full Text] [Related]
11. Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater.
Abdulkadir N; Saraiva JP; Zhang J; Stolte S; Gillor O; Harms H; Rocha U
Microbiol Spectr; 2024 Mar; 12(3):e0291823. PubMed ID: 38289113
[TBL] [Abstract][Full Text] [Related]
12. ACR: metagenome-assembled prokaryotic and eukaryotic genome refinement tool.
Seong HJ; Kim JJ; Sul WJ
Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37889119
[TBL] [Abstract][Full Text] [Related]
13. binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets.
Hickl O; Queirós P; Wilmes P; May P; Heintz-Buschart A
Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36239393
[TBL] [Abstract][Full Text] [Related]
14. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
Rotimi AM; Pierneef R; Reva ON
BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
[TBL] [Abstract][Full Text] [Related]
15. Binning unassembled short reads based on k-mer abundance covariance using sparse coding.
Kyrgyzov O; Prost V; Gazut S; Farcy B; Brüls T
Gigascience; 2020 Apr; 9(4):. PubMed ID: 32219339
[TBL] [Abstract][Full Text] [Related]
16. Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics.
Arikawa K; Ide K; Kogawa M; Saeki T; Yoda T; Endoh T; Matsuhashi A; Takeyama H; Hosokawa M
Microbiome; 2021 Oct; 9(1):202. PubMed ID: 34641955
[TBL] [Abstract][Full Text] [Related]
17. Metagenomic assembly is the main bottleneck in the identification of mobile genetic elements.
Kerkvliet JJ; Bossers A; Kers JG; Meneses R; Willems R; Schürch AC
PeerJ; 2024; 12():e16695. PubMed ID: 38188174
[TBL] [Abstract][Full Text] [Related]
18. Genome-resolved metagenomics using environmental and clinical samples.
Kayani MUR; Huang W; Feng R; Chen L
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33758906
[TBL] [Abstract][Full Text] [Related]
19. Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces.
Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
BMC Genomics; 2021 May; 22(1):330. PubMed ID: 33957869
[TBL] [Abstract][Full Text] [Related]
20. MAGICIAN: MAG simulation for investigating criteria for bioinformatic analysis.
Steinke K; Pamp SJ; Munk P
BMC Genomics; 2024 Jan; 25(1):55. PubMed ID: 38216924
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]