These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

225 related articles for article (PubMed ID: 33017003)

  • 1. VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data.
    Yasumizu Y; Hara A; Sakaguchi S; Ohkura N
    Bioinformatics; 2021 Jun; 37(10):1465-1467. PubMed ID: 33017003
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data.
    Hu X; Hurtado-Gonzales OP; Adhikari BN; French-Monar RD; Malapi M; Foster JA; McFarland CD
    BMC Bioinformatics; 2023 Dec; 24(1):470. PubMed ID: 38093207
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Holistic optimization of an RNA-seq workflow for multi-threaded environments.
    Hung LH; Lloyd W; Agumbe Sridhar R; Athmalingam Ravishankar SD; Xiong Y; Sobie E; Yeung KY
    Bioinformatics; 2019 Oct; 35(20):4173-4175. PubMed ID: 30859176
    [TBL] [Abstract][Full Text] [Related]  

  • 4. riboCleaner: a pipeline to identify and quantify rRNA read contamination from RNA-seq data in plants.
    Huang P; Davis E; Cao X; Cameron HJ
    Bioinformatics; 2022 Aug; 38(15):3840-3843. PubMed ID: 35731209
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method.
    Sun S; Xu L; Zou Q; Wang G
    Bioinformatics; 2021 Jun; 37(9):1319-1321. PubMed ID: 32976573
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.
    Sarkar H; Srivastava A; Bravo HC; Love MI; Patro R
    Bioinformatics; 2020 Jul; 36(Suppl_1):i102-i110. PubMed ID: 32657377
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads.
    Hunt M; Swann J; Constantinides B; Fowler PW; Iqbal Z
    Bioinformatics; 2022 Jun; 38(12):3291-3293. PubMed ID: 35551365
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ScanNeo: identifying indel-derived neoantigens using RNA-Seq data.
    Wang TY; Wang L; Alam SK; Hoeppner LH; Yang R
    Bioinformatics; 2019 Oct; 35(20):4159-4161. PubMed ID: 30887025
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SCRAM: a pipeline for fast index-free small RNA read alignment and visualization.
    Fletcher SJ; Boden M; Mitter N; Carroll BJ
    Bioinformatics; 2018 Aug; 34(15):2670-2672. PubMed ID: 29554210
    [TBL] [Abstract][Full Text] [Related]  

  • 10. 3t-seq: automatic gene expression analysis of single-copy genes, transposable elements, and tRNAs from RNA-seq data.
    Tabaro F; Boulard M
    Brief Bioinform; 2024 Sep; 25(6):. PubMed ID: 39322626
    [TBL] [Abstract][Full Text] [Related]  

  • 11. baerhunter: an R package for the discovery and analysis of expressed non-coding regions in bacterial RNA-seq data.
    Ozuna A; Liberto D; Joyce RM; Arnvig KB; Nobeli I
    Bioinformatics; 2020 Feb; 36(3):966-969. PubMed ID: 31418770
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ZIAQ: a quantile regression method for differential expression analysis of single-cell RNA-seq data.
    Zhang W; Wei Y; Zhang D; Xu EY
    Bioinformatics; 2020 May; 36(10):3124-3130. PubMed ID: 32053182
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ST Pipeline: an automated pipeline for spatial mapping of unique transcripts.
    Navarro JF; Sjöstrand J; Salmén F; Lundeberg J; Ståhl PL
    Bioinformatics; 2017 Aug; 33(16):2591-2593. PubMed ID: 28398467
    [TBL] [Abstract][Full Text] [Related]  

  • 14. iS-CellR: a user-friendly tool for analyzing and visualizing single-cell RNA sequencing data.
    Patel MV
    Bioinformatics; 2018 Dec; 34(24):4305-4306. PubMed ID: 29982379
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ProkSeq for complete analysis of RNA-Seq data from prokaryotes.
    Mahmud AKMF; Delhomme N; Nandi S; Fällman M
    Bioinformatics; 2021 Apr; 37(1):126-128. PubMed ID: 33367516
    [TBL] [Abstract][Full Text] [Related]  

  • 16. scRNABatchQC: multi-samples quality control for single cell RNA-seq data.
    Liu Q; Sheng Q; Ping J; Ramirez MA; Lau KS; Coffey RJ; Shyr Y
    Bioinformatics; 2019 Dec; 35(24):5306-5308. PubMed ID: 31373345
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PingPongPro: a tool for the detection of piRNA-mediated transposon-silencing in small RNA-Seq data.
    Uhrig S; Klein H
    Bioinformatics; 2019 Jan; 35(2):335-336. PubMed ID: 29985981
    [TBL] [Abstract][Full Text] [Related]  

  • 18. scHLAcount: allele-specific HLA expression from single-cell gene expression data.
    Darby CA; Stubbington MJT; Marks PJ; Martínez Barrio Á; Fiddes IT
    Bioinformatics; 2020 Jun; 36(12):3905-3906. PubMed ID: 32330223
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Scdrake: a reproducible and scalable pipeline for scRNA-seq data analysis.
    Kubovčiak J; Kolář M; Novotný J
    Bioinform Adv; 2023; 3(1):vbad089. PubMed ID: 37465398
    [TBL] [Abstract][Full Text] [Related]  

  • 20. FuSe: a tool to move RNA-Seq analyses from chromosomal/gene loci to functional grouping of mRNA transcripts.
    Gupta R; Schrooders Y; Verheijen M; Roth A; Kleinjans J; Caiment F
    Bioinformatics; 2021 Apr; 37(3):375-381. PubMed ID: 32814975
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.