BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

437 related articles for article (PubMed ID: 33023248)

  • 1. OneStopRNAseq: A Web Application for Comprehensive and Efficient Analyses of RNA-Seq Data.
    Li R; Hu K; Liu H; Green MR; Zhu LJ
    Genes (Basel); 2020 Oct; 11(10):. PubMed ID: 33023248
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNA-Seq in Nonmodel Organisms.
    Chalifa-Caspi V
    Methods Mol Biol; 2021; 2243():143-167. PubMed ID: 33606257
    [TBL] [Abstract][Full Text] [Related]  

  • 3. 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists.
    Guo W; Tzioutziou NA; Stephen G; Milne I; Calixto CP; Waugh R; Brown JWS; Zhang R
    RNA Biol; 2021 Nov; 18(11):1574-1587. PubMed ID: 33345702
    [TBL] [Abstract][Full Text] [Related]  

  • 4. recount3: summaries and queries for large-scale RNA-seq expression and splicing.
    Wilks C; Zheng SC; Chen FY; Charles R; Solomon B; Ling JP; Imada EL; Zhang D; Joseph L; Leek JT; Jaffe AE; Nellore A; Collado-Torres L; Hansen KD; Langmead B
    Genome Biol; 2021 Nov; 22(1):323. PubMed ID: 34844637
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RAP: A Web Tool for RNA-Seq Data Analysis.
    D'Antonio M; Libro P; Picardi E; Pesole G; Castrignanò T
    Methods Mol Biol; 2021; 2284():393-415. PubMed ID: 33835454
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data.
    Mahi NA; Najafabadi MF; Pilarczyk M; Kouril M; Medvedovic M
    Sci Rep; 2019 May; 9(1):7580. PubMed ID: 31110304
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Single Cell Explorer, collaboration-driven tools to leverage large-scale single cell RNA-seq data.
    Feng D; Whitehurst CE; Shan D; Hill JD; Yue YG
    BMC Genomics; 2019 Aug; 20(1):676. PubMed ID: 31455220
    [TBL] [Abstract][Full Text] [Related]  

  • 9. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
    Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
    Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RASflow: an RNA-Seq analysis workflow with Snakemake.
    Zhang X; Jonassen I
    BMC Bioinformatics; 2020 Mar; 21(1):110. PubMed ID: 32183729
    [TBL] [Abstract][Full Text] [Related]  

  • 11. iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data.
    Ge SX; Son EW; Yao R
    BMC Bioinformatics; 2018 Dec; 19(1):534. PubMed ID: 30567491
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data.
    Plonski NM; Johnson E; Frederick M; Mercer H; Fraizer G; Meindl R; Casadesus G; Piontkivska H
    BMC Bioinformatics; 2020 Dec; 21(Suppl 18):578. PubMed ID: 33375933
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
    Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
    Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GENAVi: a shiny web application for gene expression normalization, analysis and visualization.
    Reyes ALP; Silva TC; Coetzee SG; Plummer JT; Davis BD; Chen S; Hazelett DJ; Lawrenson K; Berman BP; Gayther SA; Jones MR
    BMC Genomics; 2019 Oct; 20(1):745. PubMed ID: 31619158
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA-Seq Data Analysis in Galaxy.
    Batut B; van den Beek M; Doyle MA; Soranzo N
    Methods Mol Biol; 2021; 2284():367-392. PubMed ID: 33835453
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
    Bukhari SAC; O'Connor MJ; Martínez-Romero M; Egyedi AL; Willrett D; Graybeal J; Musen MA; Rubelt F; Cheung KH; Kleinstein SH
    Front Immunol; 2018; 9():1877. PubMed ID: 30166985
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computational Analysis of circRNA Expression Data.
    Ferrero G; Licheri N; De Bortoli M; Calogero RA; Beccuti M; Cordero F
    Methods Mol Biol; 2021; 2284():181-192. PubMed ID: 33835443
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.
    D'Antonio M; D'Onorio De Meo P; Pallocca M; Picardi E; D'Erchia AM; Calogero RA; Castrignanò T; Pesole G
    BMC Genomics; 2015; 16(Suppl 6):S3. PubMed ID: 26046471
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RSeQC: quality control of RNA-seq experiments.
    Wang L; Wang S; Li W
    Bioinformatics; 2012 Aug; 28(16):2184-5. PubMed ID: 22743226
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 22.