398 related articles for article (PubMed ID: 33028202)
1. A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues.
Halstead MM; Kern C; Saelao P; Wang Y; Chanthavixay G; Medrano JF; Van Eenennaam AL; Korf I; Tuggle CK; Ernst CW; Zhou H; Ross PJ
BMC Genomics; 2020 Oct; 21(1):698. PubMed ID: 33028202
[TBL] [Abstract][Full Text] [Related]
2. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
Elife; 2020 Nov; 9():. PubMed ID: 33191916
[TBL] [Abstract][Full Text] [Related]
3. Identification and Conservation Analysis of
Luan Y; Zhang L; Hu M; Xu Y; Hou Y; Li X; Zhao S; Zhao Y; Li C
Genes (Basel); 2019 May; 10(5):. PubMed ID: 31067820
[TBL] [Abstract][Full Text] [Related]
4. Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research.
Kern C; Wang Y; Xu X; Pan Z; Halstead M; Chanthavixay G; Saelao P; Waters S; Xiang R; Chamberlain A; Korf I; Delany ME; Cheng HH; Medrano JF; Van Eenennaam AL; Tuggle CK; Ernst C; Flicek P; Quon G; Ross P; Zhou H
Nat Commun; 2021 Mar; 12(1):1821. PubMed ID: 33758196
[TBL] [Abstract][Full Text] [Related]
5. Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations.
Fang L; Liu S; Liu M; Kang X; Lin S; Li B; Connor EE; Baldwin RL; Tenesa A; Ma L; Liu GE; Li CJ
BMC Biol; 2019 Aug; 17(1):68. PubMed ID: 31419979
[TBL] [Abstract][Full Text] [Related]
6. A compendium and comparative epigenomics analysis of cis-regulatory elements in the pig genome.
Zhao Y; Hou Y; Xu Y; Luan Y; Zhou H; Qi X; Hu M; Wang D; Wang Z; Fu Y; Li J; Zhang S; Chen J; Han J; Li X; Zhao S
Nat Commun; 2021 Apr; 12(1):2217. PubMed ID: 33850120
[TBL] [Abstract][Full Text] [Related]
7. A map of the cis-regulatory sequences in the mouse genome.
Shen Y; Yue F; McCleary DF; Ye Z; Edsall L; Kuan S; Wagner U; Dixon J; Lee L; Lobanenkov VV; Ren B
Nature; 2012 Aug; 488(7409):116-20. PubMed ID: 22763441
[TBL] [Abstract][Full Text] [Related]
8. Multi-species annotation of transcriptome and chromatin structure in domesticated animals.
Foissac S; Djebali S; Munyard K; Vialaneix N; Rau A; Muret K; Esquerré D; Zytnicki M; Derrien T; Bardou P; Blanc F; Cabau C; Crisci E; Dhorne-Pollet S; Drouet F; Faraut T; Gonzalez I; Goubil A; Lacroix-Lamandé S; Laurent F; Marthey S; Marti-Marimon M; Momal-Leisenring R; Mompart F; Quéré P; Robelin D; Cristobal MS; Tosser-Klopp G; Vincent-Naulleau S; Fabre S; Pinard-Van der Laan MH; Klopp C; Tixier-Boichard M; Acloque H; Lagarrigue S; Giuffra E
BMC Biol; 2019 Dec; 17(1):108. PubMed ID: 31884969
[TBL] [Abstract][Full Text] [Related]
9. The accessible chromatin landscape of the human genome.
Thurman RE; Rynes E; Humbert R; Vierstra J; Maurano MT; Haugen E; Sheffield NC; Stergachis AB; Wang H; Vernot B; Garg K; John S; Sandstrom R; Bates D; Boatman L; Canfield TK; Diegel M; Dunn D; Ebersol AK; Frum T; Giste E; Johnson AK; Johnson EM; Kutyavin T; Lajoie B; Lee BK; Lee K; London D; Lotakis D; Neph S; Neri F; Nguyen ED; Qu H; Reynolds AP; Roach V; Safi A; Sanchez ME; Sanyal A; Shafer A; Simon JM; Song L; Vong S; Weaver M; Yan Y; Zhang Z; Zhang Z; Lenhard B; Tewari M; Dorschner MO; Hansen RS; Navas PA; Stamatoyannopoulos G; Iyer VR; Lieb JD; Sunyaev SR; Akey JM; Sabo PJ; Kaul R; Furey TS; Dekker J; Crawford GE; Stamatoyannopoulos JA
Nature; 2012 Sep; 489(7414):75-82. PubMed ID: 22955617
[TBL] [Abstract][Full Text] [Related]
10. Profiling of open chromatin in developing pig (Sus scrofa) muscle to identify regulatory regions.
Salavati M; Woolley SA; Cortés Araya Y; Halstead MM; Stenhouse C; Johnsson M; Ashworth CJ; Archibald AL; Donadeu FX; Hassan MA; Clark EL
G3 (Bethesda); 2022 Feb; 12(2):. PubMed ID: 34897420
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.
Kern C; Wang Y; Chitwood J; Korf I; Delany M; Cheng H; Medrano JF; Van Eenennaam AL; Ernst C; Ross P; Zhou H
BMC Genomics; 2018 Sep; 19(1):684. PubMed ID: 30227846
[TBL] [Abstract][Full Text] [Related]
12. An ATAC-seq atlas of chromatin accessibility in mouse tissues.
Liu C; Wang M; Wei X; Wu L; Xu J; Dai X; Xia J; Cheng M; Yuan Y; Zhang P; Li J; Feng T; Chen A; Zhang W; Chen F; Shang Z; Zhang X; Peters BA; Liu L
Sci Data; 2019 May; 6(1):65. PubMed ID: 31110271
[TBL] [Abstract][Full Text] [Related]
13. Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
Marinov GK; Shipony Z
Methods Mol Biol; 2021; 2243():183-226. PubMed ID: 33606259
[TBL] [Abstract][Full Text] [Related]
14. Pig genome functional annotation enhances the biological interpretation of complex traits and human disease.
Pan Z; Yao Y; Yin H; Cai Z; Wang Y; Bai L; Kern C; Halstead M; Chanthavixay G; Trakooljul N; Wimmers K; Sahana G; Su G; Lund MS; Fredholm M; Karlskov-Mortensen P; Ernst CW; Ross P; Tuggle CK; Fang L; Zhou H
Nat Commun; 2021 Oct; 12(1):5848. PubMed ID: 34615879
[TBL] [Abstract][Full Text] [Related]
15. A map of cis-regulatory elements and 3D genome structures in zebrafish.
Yang H; Luan Y; Liu T; Lee HJ; Fang L; Wang Y; Wang X; Zhang B; Jin Q; Ang KC; Xing X; Wang J; Xu J; Song F; Sriranga I; Khunsriraksakul C; Salameh T; Li D; Choudhary MNK; Topczewski J; Wang K; Gerhard GS; Hardison RC; Wang T; Cheng KC; Yue F
Nature; 2020 Dec; 588(7837):337-343. PubMed ID: 33239788
[TBL] [Abstract][Full Text] [Related]
16. Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei.
Debernardi JM; Burguener G; Bubb K; Liu Q; Queitsch C; Dubcovsky J
BMC Plant Biol; 2023 May; 23(1):270. PubMed ID: 37211599
[TBL] [Abstract][Full Text] [Related]
17. Genome-wide analysis of chromatin accessibility using ATAC-seq.
Shashikant T; Ettensohn CA
Methods Cell Biol; 2019; 151():219-235. PubMed ID: 30948010
[TBL] [Abstract][Full Text] [Related]
18. Chromatin accessibility and regulatory vocabulary across indicine cattle tissues.
Alexandre PA; Naval-Sánchez M; Menzies M; Nguyen LT; Porto-Neto LR; Fortes MRS; Reverter A
Genome Biol; 2021 Sep; 22(1):273. PubMed ID: 34548076
[TBL] [Abstract][Full Text] [Related]
19. Regulatory chromatin landscape in
Tannenbaum M; Sarusi-Portuguez A; Krispil R; Schwartz M; Loza O; Benichou JIC; Mosquna A; Hakim O
Plant Methods; 2018; 14():113. PubMed ID: 30598689
[TBL] [Abstract][Full Text] [Related]
20. Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.
Halstead MM; Kern C; Saelao P; Chanthavixay G; Wang Y; Delany ME; Zhou H; Ross PJ
Sci Rep; 2020 Mar; 10(1):5230. PubMed ID: 32251359
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
