119 related articles for article (PubMed ID: 33028839)
1. Framework for quality assessment of whole genome cancer sequences.
Whalley JP; Buchhalter I; Rheinbay E; Raine KM; Stobbe MD; Kleinheinz K; Werner J; Beltran S; Gut M; Hübschmann D; Hutter B; Livitz D; Perry MD; Rosenberg M; Saksena G; Trotta JR; Eils R; Gerhard DS; Campbell PJ; Schlesner M; Gut IG
Nat Commun; 2020 Oct; 11(1):5040. PubMed ID: 33028839
[TBL] [Abstract][Full Text] [Related]
2. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
Shringarpure SS; Mathias RA; Hernandez RD; O'Connor TD; Szpiech ZA; Torres R; De La Vega FM; Bustamante CD; Barnes KC; Taub MA;
Bioinformatics; 2017 Apr; 33(8):1147-1153. PubMed ID: 28035032
[TBL] [Abstract][Full Text] [Related]
3. Scanning window analysis of non-coding regions within normal-tumor whole-genome sequence samples.
Torcivia JP; Mazumder R
Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32940334
[TBL] [Abstract][Full Text] [Related]
4. qc3C: Reference-free quality control for Hi-C sequencing data.
DeMaere MZ; Darling AE
PLoS Comput Biol; 2021 Oct; 17(10):e1008839. PubMed ID: 34634030
[TBL] [Abstract][Full Text] [Related]
5. Evaluation of Whole Genome Sequencing Data.
Hübschmann D; Schlesner M
Methods Mol Biol; 2019; 1956():321-336. PubMed ID: 30779042
[TBL] [Abstract][Full Text] [Related]
6. Understanding genome structural variations.
Abyzov A; Li S; Gerstein MB
Oncotarget; 2016 Feb; 7(7):7370-1. PubMed ID: 26657727
[No Abstract] [Full Text] [Related]
7. Identification of coding and non-coding mutational hotspots in cancer genomes.
Piraino SW; Furney SJ
BMC Genomics; 2017 Jan; 18(1):17. PubMed ID: 28056774
[TBL] [Abstract][Full Text] [Related]
8. Human Papillomavirus Detection by Whole-Genome Next-Generation Sequencing: Importance of Validation and Quality Assurance Procedures.
Mühr LSA; Guerendiain D; Cuschieri K; Sundström K
Viruses; 2021 Jul; 13(7):. PubMed ID: 34372528
[TBL] [Abstract][Full Text] [Related]
9. Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.
Fang LT; Zhu B; Zhao Y; Chen W; Yang Z; Kerrigan L; Langenbach K; de Mars M; Lu C; Idler K; Jacob H; Zheng Y; Ren L; Yu Y; Jaeger E; Schroth GP; Abaan OD; Talsania K; Lack J; Shen TW; Chen Z; Stanbouly S; Tran B; Shetty J; Kriga Y; Meerzaman D; Nguyen C; Petitjean V; Sultan M; Cam M; Mehta M; Hung T; Peters E; Kalamegham R; Sahraeian SME; Mohiyuddin M; Guo Y; Yao L; Song L; Lam HYK; Drabek J; Vojta P; Maestro R; Gasparotto D; Kõks S; Reimann E; Scherer A; Nordlund J; Liljedahl U; Jensen RV; Pirooznia M; Li Z; Xiao C; Sherry ST; Kusko R; Moos M; Donaldson E; Tezak Z; Ning B; Tong W; Li J; Duerken-Hughes P; Catalanotti C; Maheshwari S; Shuga J; Liang WS; Keats J; Adkins J; Tassone E; Zismann V; McDaniel T; Trent J; Foox J; Butler D; Mason CE; Hong H; Shi L; Wang C; Xiao W;
Nat Biotechnol; 2021 Sep; 39(9):1151-1160. PubMed ID: 34504347
[TBL] [Abstract][Full Text] [Related]
10. Quality control metrics improve repeatability and reproducibility of single-nucleotide variants derived from whole-genome sequencing.
Zhang W; Soika V; Meehan J; Su Z; Ge W; Ng HW; Perkins R; Simonyan V; Tong W; Hong H
Pharmacogenomics J; 2015 Aug; 15(4):298-309. PubMed ID: 25384574
[TBL] [Abstract][Full Text] [Related]
11. Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics.
Munchel S; Hoang Y; Zhao Y; Cottrell J; Klotzle B; Godwin AK; Koestler D; Beyerlein P; Fan JB; Bibikova M; Chien J
Oncotarget; 2015 Sep; 6(28):25943-61. PubMed ID: 26305677
[TBL] [Abstract][Full Text] [Related]
12. PaSD-qc: quality control for single cell whole-genome sequencing data using power spectral density estimation.
Sherman MA; Barton AR; Lodato MA; Vitzthum C; Coulter ME; Walsh CA; Park PJ
Nucleic Acids Res; 2018 Feb; 46(4):e20. PubMed ID: 29186545
[TBL] [Abstract][Full Text] [Related]
13. Human whole genome sequencing in South Africa.
Glanzmann B; Jooste T; Ghoor S; Gordon R; Mia R; Mao J; Li H; Charls P; Douman C; Kotze MJ; Peeters AV; Loots G; Esser M; Tiemessen CT; Wilkinson RJ; Louw J; Gray G; Warren RM; Möller M; Kinnear C
Sci Rep; 2021 Jan; 11(1):606. PubMed ID: 33436733
[TBL] [Abstract][Full Text] [Related]
14. Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.
Kumar S; Warrell J; Li S; McGillivray PD; Meyerson W; Salichos L; Harmanci A; Martinez-Fundichely A; Chan CWY; Nielsen MM; Lochovsky L; Zhang Y; Li X; Lou S; Pedersen JS; Herrmann C; Getz G; Khurana E; Gerstein MB
Cell; 2020 Mar; 180(5):915-927.e16. PubMed ID: 32084333
[TBL] [Abstract][Full Text] [Related]
15. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.
Mendoza-Parra MA; Saleem MA; Blum M; Cholley PE; Gronemeyer H
Methods Mol Biol; 2016; 1418():243-65. PubMed ID: 27008019
[TBL] [Abstract][Full Text] [Related]
16. GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations.
Manchanda N; Portwood JL; Woodhouse MR; Seetharam AS; Lawrence-Dill CJ; Andorf CM; Hufford MB
BMC Genomics; 2020 Mar; 21(1):193. PubMed ID: 32122303
[TBL] [Abstract][Full Text] [Related]
17. A user guide for the online exploration and visualization of PCAWG data.
Goldman MJ; Zhang J; Fonseca NA; Cortés-Ciriano I; Xiang Q; Craft B; Piñeiro-Yáñez E; O'Connor BD; Bazant W; Barrera E; Muñoz-Pomer A; Petryszak R; Füllgrabe A; Al-Shahrour F; Keays M; Haussler D; Weinstein JN; Huber W; Valencia A; Park PJ; Papatheodorou I; Zhu J; Ferretti V; Vazquez M
Nat Commun; 2020 Jul; 11(1):3400. PubMed ID: 32636365
[TBL] [Abstract][Full Text] [Related]
18. Generating realistic null hypothesis of cancer mutational landscapes using SigProfilerSimulator.
Bergstrom EN; Barnes M; Martincorena I; Alexandrov LB
BMC Bioinformatics; 2020 Oct; 21(1):438. PubMed ID: 33028213
[TBL] [Abstract][Full Text] [Related]
19. Combined burden and functional impact tests for cancer driver discovery using DriverPower.
Shuai S; ; Gallinger S; Stein LD;
Nat Commun; 2020 Feb; 11(1):734. PubMed ID: 32024818
[TBL] [Abstract][Full Text] [Related]
20. TelomereHunter - in silico estimation of telomere content and composition from cancer genomes.
Feuerbach L; Sieverling L; Deeg KI; Ginsbach P; Hutter B; Buchhalter I; Northcott PA; Mughal SS; Chudasama P; Glimm H; Scholl C; Lichter P; Fröhling S; Pfister SM; Jones DTW; Rippe K; Brors B
BMC Bioinformatics; 2019 May; 20(1):272. PubMed ID: 31138115
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]