BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

473 related articles for article (PubMed ID: 33035301)

  • 1. Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications.
    Prodanov T; Bansal V
    Nucleic Acids Res; 2020 Nov; 48(19):e114. PubMed ID: 33035301
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
    Edge P; Bansal V
    Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment.
    Fu Y; Mahmoud M; Muraliraman VV; Sedlazeck FJ; Treangen TJ
    Gigascience; 2021 Sep; 10(9):. PubMed ID: 34561697
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.
    Soylev A; Le TM; Amini H; Alkan C; Hormozdiari F
    Bioinformatics; 2019 Oct; 35(20):3923-3930. PubMed ID: 30937433
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
    Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
    Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
    [TBL] [Abstract][Full Text] [Related]  

  • 6. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
    Nurk S; Walenz BP; Rhie A; Vollger MR; Logsdon GA; Grothe R; Miga KH; Eichler EE; Phillippy AM; Koren S
    Genome Res; 2020 Sep; 30(9):1291-1305. PubMed ID: 32801147
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A multilocus approach for accurate variant calling in low-copy repeats using whole-genome sequencing.
    Prodanov T; Bansal V
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i279-i287. PubMed ID: 37387146
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Robust and accurate estimation of paralog-specific copy number for duplicated genes using whole-genome sequencing.
    Prodanov T; Bansal V
    Nat Commun; 2022 Jun; 13(1):3221. PubMed ID: 35680869
    [TBL] [Abstract][Full Text] [Related]  

  • 9. NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads.
    Adam E; Ranjan D; Riethman H
    BMC Bioinformatics; 2022 Dec; 23(1):545. PubMed ID: 36526983
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics.
    Thankaswamy-Kosalai S; Sen P; Nookaew I
    Genomics; 2017 Jul; 109(3-4):186-191. PubMed ID: 28286147
    [TBL] [Abstract][Full Text] [Related]  

  • 14. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
    Haghshenas E; Sahinalp SC; Hach F
    Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Long-read sequence and assembly of segmental duplications.
    Vollger MR; Dishuck PC; Sorensen M; Welch AE; Dang V; Dougherty ML; Graves-Lindsay TA; Wilson RK; Chaisson MJP; Eichler EE
    Nat Methods; 2019 Jan; 16(1):88-94. PubMed ID: 30559433
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.
    Roberts HE; Lopopolo M; Pagnamenta AT; Sharma E; Parkes D; Lonie L; Freeman C; Knight SJL; Lunter G; Dreau H; Lockstone H; Taylor JC; Schuh A; Bowden R; Buck D
    Sci Rep; 2021 Mar; 11(1):6408. PubMed ID: 33742045
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment.
    Yeh CC; Amorosi CJ; Showman S; Dunham MJ
    Bioinformatics; 2022 May; 38(10):2927-2929. PubMed ID: 35561209
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improvement of large copy number variant detection by whole genome nanopore sequencing.
    Cuenca-Guardiola J; de la Morena-Barrio B; García JL; Sanchis-Juan A; Corral J; Fernández-Breis JT
    J Adv Res; 2023 Aug; 50():145-158. PubMed ID: 36323370
    [TBL] [Abstract][Full Text] [Related]  

  • 19. LAMSA: fast split read alignment with long approximate matches.
    Liu B; Gao Y; Wang Y
    Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome.
    Marin M; Vargas R; Harris M; Jeffrey B; Epperson LE; Durbin D; Strong M; Salfinger M; Iqbal Z; Akhundova I; Vashakidze S; Crudu V; Rosenthal A; Farhat MR
    Bioinformatics; 2022 Mar; 38(7):1781-1787. PubMed ID: 35020793
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.