These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

691 related articles for article (PubMed ID: 33037292)

  • 1. Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography.
    Andersson A; Bergenstråhle J; Asp M; Bergenstråhle L; Jurek A; Fernández Navarro J; Lundeberg J
    Commun Biol; 2020 Oct; 3(1):565. PubMed ID: 33037292
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Single-cell multiomics: technologies and data analysis methods.
    Lee J; Hyeon DY; Hwang D
    Exp Mol Med; 2020 Sep; 52(9):1428-1442. PubMed ID: 32929225
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SPICEMIX enables integrative single-cell spatial modeling of cell identity.
    Chidester B; Zhou T; Alam S; Ma J
    Nat Genet; 2023 Jan; 55(1):78-88. PubMed ID: 36624346
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mapping Cellular Coordinates through Advances in Spatial Transcriptomics Technology.
    Teves JM; Won KJ
    Mol Cells; 2020 Jul; 43(7):591-599. PubMed ID: 32507771
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Simulating multiple variability in spatially resolved transcriptomics with scCube.
    Qian J; Bao H; Shao X; Fang Y; Liao J; Chen Z; Li C; Guo W; Hu Y; Li A; Yao Y; Fan X; Cheng Y
    Nat Commun; 2024 Jun; 15(1):5021. PubMed ID: 38866768
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing.
    Nelson ME; Riva SG; Cvejic A
    BMC Bioinformatics; 2022 Aug; 23(1):328. PubMed ID: 35941549
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding.
    Shen R; Liu L; Wu Z; Zhang Y; Yuan Z; Guo J; Yang F; Zhang C; Chen B; Feng W; Liu C; Guo J; Fan G; Zhang Y; Li Y; Xu X; Yao J
    Nat Commun; 2022 Dec; 13(1):7640. PubMed ID: 36496406
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities.
    Singh R; Hie BL; Narayan A; Berger B
    Genome Biol; 2021 May; 22(1):131. PubMed ID: 33941239
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Method of the Year: spatially resolved transcriptomics.
    Marx V
    Nat Methods; 2021 Jan; 18(1):9-14. PubMed ID: 33408395
    [No Abstract]   [Full Text] [Related]  

  • 10. Single-cell and spatially resolved transcriptomics for liver biology.
    Lin P; Yan X; Jing S; Wu Y; Shan Y; Guo W; Gu J; Li Y; Zhang H; Li H
    Hepatology; 2024 Sep; 80(3):698-720. PubMed ID: 37002587
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays.
    Chen A; Liao S; Cheng M; Ma K; Wu L; Lai Y; Qiu X; Yang J; Xu J; Hao S; Wang X; Lu H; Chen X; Liu X; Huang X; Li Z; Hong Y; Jiang Y; Peng J; Liu S; Shen M; Liu C; Li Q; Yuan Y; Wei X; Zheng H; Feng W; Wang Z; Liu Y; Wang Z; Yang Y; Xiang H; Han L; Qin B; Guo P; Lai G; Muñoz-Cánoves P; Maxwell PH; Thiery JP; Wu QF; Zhao F; Chen B; Li M; Dai X; Wang S; Kuang H; Hui J; Wang L; Fei JF; Wang O; Wei X; Lu H; Wang B; Liu S; Gu Y; Ni M; Zhang W; Mu F; Yin Y; Yang H; Lisby M; Cornall RJ; Mulder J; Uhlén M; Esteban MA; Li Y; Liu L; Xu X; Wang J
    Cell; 2022 May; 185(10):1777-1792.e21. PubMed ID: 35512705
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A practical guide to spatial transcriptomics.
    Valihrach L; Zucha D; Abaffy P; Kubista M
    Mol Aspects Med; 2024 Jun; 97():101276. PubMed ID: 38776574
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST.
    Liu W; Liao X; Luo Z; Yang Y; Lau MC; Jiao Y; Shi X; Zhai W; Ji H; Yeong J; Liu J
    Nat Commun; 2023 Jan; 14(1):296. PubMed ID: 36653349
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data.
    Geras A; Darvish Shafighi S; Domżał K; Filipiuk I; Rączkowska A; Szymczak P; Toosi H; Kaczmarek L; Koperski Ł; Lagergren J; Nowis D; Szczurek E
    Genome Biol; 2023 May; 24(1):120. PubMed ID: 37198601
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data.
    Vandenbon A; Diez D
    Nat Commun; 2020 Aug; 11(1):4318. PubMed ID: 32859930
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics.
    Sang-Aram C; Browaeys R; Seurinck R; Saeys Y
    Elife; 2024 May; 12():. PubMed ID: 38787371
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Spatial epigenome-transcriptome co-profiling of mammalian tissues.
    Zhang D; Deng Y; Kukanja P; Agirre E; Bartosovic M; Dong M; Ma C; Ma S; Su G; Bao S; Liu Y; Xiao Y; Rosoklija GB; Dwork AJ; Mann JJ; Leong KW; Boldrini M; Wang L; Haeussler M; Raphael BJ; Kluger Y; Castelo-Branco G; Fan R
    Nature; 2023 Apr; 616(7955):113-122. PubMed ID: 36922587
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Encoding Method of Single-cell Spatial Transcriptomics Sequencing.
    Zhou Y; Jia E; Pan M; Zhao X; Ge Q
    Int J Biol Sci; 2020; 16(14):2663-2674. PubMed ID: 32792863
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DOT: a flexible multi-objective optimization framework for transferring features across single-cell and spatial omics.
    Rahimi A; Vale-Silva LA; Fälth Savitski M; Tanevski J; Saez-Rodriguez J
    Nat Commun; 2024 Jun; 15(1):4994. PubMed ID: 38862466
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Cell segmentation-free inference of cell types from in situ transcriptomics data.
    Park J; Choi W; Tiesmeyer S; Long B; Borm LE; Garren E; Nguyen TN; Tasic B; Codeluppi S; Graf T; Schlesner M; Stegle O; Eils R; Ishaque N
    Nat Commun; 2021 Jun; 12(1):3545. PubMed ID: 34112806
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 35.