BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 33040418)

  • 1. The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes.
    Lipsh-Sokolik R; Listov D; Fleishman SJ
    Protein Sci; 2021 Jan; 30(1):151-159. PubMed ID: 33040418
    [TBL] [Abstract][Full Text] [Related]  

  • 2. AbDesign: An algorithm for combinatorial backbone design guided by natural conformations and sequences.
    Lapidoth GD; Baran D; Pszolla GM; Norn C; Alon A; Tyka MD; Fleishman SJ
    Proteins; 2015 Aug; 83(8):1385-406. PubMed ID: 25670500
    [TBL] [Abstract][Full Text] [Related]  

  • 3. High-accuracy modeling of antibody structures by a search for minimum-energy recombination of backbone fragments.
    Norn CH; Lapidoth G; Fleishman SJ
    Proteins; 2017 Jan; 85(1):30-38. PubMed ID: 27717001
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Principles for computational design of binding antibodies.
    Baran D; Pszolla MG; Lapidoth GD; Norn C; Dym O; Unger T; Albeck S; Tyka MD; Fleishman SJ
    Proc Natl Acad Sci U S A; 2017 Oct; 114(41):10900-10905. PubMed ID: 28973872
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computational protein design with backbone plasticity.
    MacDonald JT; Freemont PS
    Biochem Soc Trans; 2016 Oct; 44(5):1523-1529. PubMed ID: 27911735
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Motif-directed redesign of enzyme specificity.
    Borgo B; Havranek JJ
    Protein Sci; 2014 Mar; 23(3):312-20. PubMed ID: 24407908
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Molecular dynamics explorations of active site structure in designed and evolved enzymes.
    Osuna S; Jiménez-Osés G; Noey EL; Houk KN
    Acc Chem Res; 2015 Apr; 48(4):1080-9. PubMed ID: 25738880
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A "fuzzy"-logic language for encoding multiple physical traits in biomolecules.
    Warszawski S; Netzer R; Tawfik DS; Fleishman SJ
    J Mol Biol; 2014 Dec; 426(24):4125-4138. PubMed ID: 25311857
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Loop modelling 1.0.
    Shirvanizadeh N; Vriend G; Arab SS
    J Mol Graph Model; 2018 Sep; 84():64-68. PubMed ID: 29920424
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Sequence-based enzyme catalytic domain prediction using clustering and aggregated mutual information content.
    Choi K; Kim S
    J Bioinform Comput Biol; 2011 Oct; 9(5):597-611. PubMed ID: 21976378
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Tertiary alphabet for the observable protein structural universe.
    Mackenzie CO; Zhou J; Grigoryan G
    Proc Natl Acad Sci U S A; 2016 Nov; 113(47):E7438-E7447. PubMed ID: 27810958
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A computational method for the design of nested proteins by loop-directed domain insertion.
    Blacklock KM; Yang L; Mulligan VK; Khare SD
    Proteins; 2018 Mar; 86(3):354-369. PubMed ID: 29250820
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structural alignment of protein descriptors - a combinatorial model.
    Antczak M; Kasprzak M; Lukasiak P; Blazewicz J
    BMC Bioinformatics; 2016 Sep; 17():383. PubMed ID: 27639380
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computational design of structured loops for new protein functions.
    Kundert K; Kortemme T
    Biol Chem; 2019 Feb; 400(3):275-288. PubMed ID: 30676995
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Modularity in protein structures: study on all-alpha proteins.
    Khan T; Ghosh I
    J Biomol Struct Dyn; 2015; 33(12):2667-81. PubMed ID: 25669306
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Unification of protein families.
    Holm L
    Curr Opin Struct Biol; 1998 Jun; 8(3):372-9. PubMed ID: 9666334
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Kemp elimination catalysts by computational enzyme design.
    Röthlisberger D; Khersonsky O; Wollacott AM; Jiang L; DeChancie J; Betker J; Gallaher JL; Althoff EA; Zanghellini A; Dym O; Albeck S; Houk KN; Tawfik DS; Baker D
    Nature; 2008 May; 453(7192):190-5. PubMed ID: 18354394
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PocketOptimizer 2.0: A modular framework for computer-aided ligand-binding design.
    Noske J; Kynast JP; Lemm D; Schmidt S; Höcker B
    Protein Sci; 2023 Jan; 32(1):e4516. PubMed ID: 36403089
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Solubis: a webserver to reduce protein aggregation through mutation.
    Van Durme J; De Baets G; Van Der Kant R; Ramakers M; Ganesan A; Wilkinson H; Gallardo R; Rousseau F; Schymkowitz J
    Protein Eng Des Sel; 2016 Aug; 29(8):285-9. PubMed ID: 27284085
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein backbone ensemble generation explores the local structural space of unseen natural homologs.
    Schenkelberg CD; Bystroff C
    Bioinformatics; 2016 May; 32(10):1454-61. PubMed ID: 26787668
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.