These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

181 related articles for article (PubMed ID: 33051455)

  • 1. Single-cell RNA cap and tail sequencing (scRCAT-seq) reveals subtype-specific isoforms differing in transcript demarcation.
    Hu Y; Zhong J; Xiao Y; Xing Z; Sheu K; Fan S; An Q; Qiu Y; Zheng Y; Liu X; Fan G; Liu Y
    Nat Commun; 2020 Oct; 11(1):5148. PubMed ID: 33051455
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer.
    Byrne A; Le D; Sereti K; Menon H; Vaidya S; Patel N; Lund J; Xavier-Magalhães A; Shi M; Liang Y; Sterne-Weiler T; Modrusan Z; Stephenson W
    Nat Commun; 2024 Aug; 15(1):6916. PubMed ID: 39134520
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events.
    Zhang SJ; Wang C; Yan S; Fu A; Luan X; Li Y; Sunny Shen Q; Zhong X; Chen JY; Wang X; Chin-Ming Tan B; He A; Li CY
    Mol Biol Evol; 2017 Oct; 34(10):2453-2468. PubMed ID: 28957512
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluation and comparison of computational tools for RNA-seq isoform quantification.
    Zhang C; Zhang B; Lin LL; Zhao S
    BMC Genomics; 2017 Aug; 18(1):583. PubMed ID: 28784092
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues.
    Reyes A; Huber W
    Nucleic Acids Res; 2018 Jan; 46(2):582-592. PubMed ID: 29202200
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq.
    Rebboah E; Reese F; Williams K; Balderrama-Gutierrez G; McGill C; Trout D; Rodriguez I; Liang H; Wold BJ; Mortazavi A
    Genome Biol; 2021 Oct; 22(1):286. PubMed ID: 34620214
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Single-cell RNA counting at allele and isoform resolution using Smart-seq3.
    Hagemann-Jensen M; Ziegenhain C; Chen P; Ramsköld D; Hendriks GJ; Larsson AJM; Faridani OR; Sandberg R
    Nat Biotechnol; 2020 Jun; 38(6):708-714. PubMed ID: 32518404
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome-Wide Study of mRNA Isoform Half-Lives.
    Geisberg JV; Moqtaderi Z
    Methods Mol Biol; 2016; 1358():317-23. PubMed ID: 26463393
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq.
    Martinez-Nunez RT; Sanford JR
    Methods Mol Biol; 2016; 1358():99-108. PubMed ID: 26463379
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Long-Read Sequencing of Human Cytomegalovirus Transcriptome Reveals RNA Isoforms Carrying Distinct Coding Potentials.
    Balázs Z; Tombácz D; Szűcs A; Csabai Z; Megyeri K; Petrov AN; Snyder M; Boldogkői Z
    Sci Rep; 2017 Nov; 7(1):15989. PubMed ID: 29167532
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genome-wide identification of transcript start and end sites by transcript isoform sequencing.
    Pelechano V; Wei W; Jakob P; Steinmetz LM
    Nat Protoc; 2014 Jul; 9(7):1740-59. PubMed ID: 24967623
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Deconvolution of expression for nascent RNA-sequencing data (DENR) highlights pre-RNA isoform diversity in human cells.
    Zhao Y; Dukler N; Barshad G; Toneyan S; Danko CG; Siepel A
    Bioinformatics; 2021 Dec; 37(24):4727-4736. PubMed ID: 34382072
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome.
    Ettwiller L; Buswell J; Yigit E; Schildkraut I
    BMC Genomics; 2016 Mar; 17():199. PubMed ID: 26951544
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Bridging the splicing gap in human genetics with long-read RNA sequencing: finding the protein isoform drivers of disease.
    Castaldi PJ; Abood A; Farber CR; Sheynkman GM
    Hum Mol Genet; 2022 Oct; 31(R1):R123-R136. PubMed ID: 35960994
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SSP: an interval integer linear programming for de novo transcriptome assembly and isoform discovery of RNA-seq reads.
    Safikhani Z; Sadeghi M; Pezeshk H; Eslahchi C
    Genomics; 2013; 102(5-6):507-14. PubMed ID: 24161398
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genome-Wide Mapping of 5' Isoforms with 5'-Seq.
    Gvozdenov Z
    Curr Protoc; 2023 Apr; 3(4):e750. PubMed ID: 37084173
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.
    Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M
    Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comprehensive catalog of dendritically localized mRNA isoforms from sub-cellular sequencing of single mouse neurons.
    Middleton SA; Eberwine J; Kim J
    BMC Biol; 2019 Jan; 17(1):5. PubMed ID: 30678683
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.
    Patro R; Mount SM; Kingsford C
    Nat Biotechnol; 2014 May; 32(5):462-4. PubMed ID: 24752080
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.