255 related articles for article (PubMed ID: 33054771)
1. smORFunction: a tool for predicting functions of small open reading frames and microproteins.
Ji X; Cui C; Cui Q
BMC Bioinformatics; 2020 Oct; 21(1):455. PubMed ID: 33054771
[TBL] [Abstract][Full Text] [Related]
2. Enrichment-Based Proteogenomics Identifies Microproteins, Missing Proteins, and Novel smORFs in Saccharomyces cerevisiae.
He C; Jia C; Zhang Y; Xu P
J Proteome Res; 2018 Jul; 17(7):2335-2344. PubMed ID: 29897761
[TBL] [Abstract][Full Text] [Related]
3. Accurate annotation of human protein-coding small open reading frames.
Martinez TF; Chu Q; Donaldson C; Tan D; Shokhirev MN; Saghatelian A
Nat Chem Biol; 2020 Apr; 16(4):458-468. PubMed ID: 31819274
[TBL] [Abstract][Full Text] [Related]
4. Integrated workflow for discovery of microprotein-coding small open reading frames.
Cao K; Hajy Heydary Y; Tong G; Martinez TF
STAR Protoc; 2023 Dec; 4(4):102649. PubMed ID: 37874679
[TBL] [Abstract][Full Text] [Related]
5. Identification of novel smORFs and microprotein acting in response to rehydration of Nostoc flagelliforme.
Peng Z; Huwanixi A; Wan C
Proteomics; 2023 Jun; 23(12):e2200473. PubMed ID: 36947710
[TBL] [Abstract][Full Text] [Related]
6. A vast pool of lineage-specific microproteins encoded by long non-coding RNAs in plants.
Fesenko I; Shabalina SA; Mamaeva A; Knyazev A; Glushkevich A; Lyapina I; Ziganshin R; Kovalchuk S; Kharlampieva D; Lazarev V; Taliansky M; Koonin EV
Nucleic Acids Res; 2021 Oct; 49(18):10328-10346. PubMed ID: 34570232
[TBL] [Abstract][Full Text] [Related]
7. Comparison of software packages for detecting unannotated translated small open reading frames by Ribo-seq.
Tong G; Hah N; Martinez TF
Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38842510
[TBL] [Abstract][Full Text] [Related]
8. Automated Prediction and Annotation of Small Open Reading Frames in Microbial Genomes.
Durrant MG; Bhatt AS
Cell Host Microbe; 2021 Jan; 29(1):121-131.e4. PubMed ID: 33290720
[TBL] [Abstract][Full Text] [Related]
9. Microproteins: a 3D protein structure prediction analysis.
Thambu K; Glomb V; Hernandez Trapero R; Facelli JC
J Biomol Struct Dyn; 2022; 40(24):13738-13746. PubMed ID: 34705603
[TBL] [Abstract][Full Text] [Related]
10. The influence of transcript assembly on the proteogenomics discovery of microproteins.
Ma J; Saghatelian A; Shokhirev MN
PLoS One; 2018; 13(3):e0194518. PubMed ID: 29584760
[TBL] [Abstract][Full Text] [Related]
11. sOCP: a framework predicting smORF coding potential based on TIS and in-frame features and effectively applied in the human genome.
Peng Z; Li J; Jiang X; Wan C
Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38600664
[TBL] [Abstract][Full Text] [Related]
12. Long Non-Coding RNAs Associated with Ribosomes in Human Adipose-Derived Stem Cells: From RNAs to Microproteins.
Bonilauri B; Holetz FB; Dallagiovanna B
Biomolecules; 2021 Nov; 11(11):. PubMed ID: 34827671
[TBL] [Abstract][Full Text] [Related]
13. Proteomic Detection and Validation of Translated Small Open Reading Frames.
Khitun A; Slavoff SA
Curr Protoc Chem Biol; 2019 Dec; 11(4):e77. PubMed ID: 31750990
[TBL] [Abstract][Full Text] [Related]
14. Short open reading frames (sORFs) and microproteins: an update on their identification and validation measures.
Leong AZ; Lee PY; Mohtar MA; Syafruddin SE; Pung YF; Low TY
J Biomed Sci; 2022 Mar; 29(1):19. PubMed ID: 35300685
[TBL] [Abstract][Full Text] [Related]
15. ProsmORF-pred: a machine learning-based method for the identification of small ORFs in prokaryotic genomes.
Khanduja A; Kumar M; Mohanty D
Brief Bioinform; 2023 May; 24(3):. PubMed ID: 36988160
[TBL] [Abstract][Full Text] [Related]
16. Microproteins in skeletal muscle: hidden keys in muscle physiology.
Bonilauri B; Dallagiovanna B
J Cachexia Sarcopenia Muscle; 2022 Feb; 13(1):100-113. PubMed ID: 34850602
[TBL] [Abstract][Full Text] [Related]
17. Discovering microproteins: making the most of ribosome profiling data.
Chothani S; Ho L; Schafer S; Rackham O
RNA Biol; 2023 Jan; 20(1):943-954. PubMed ID: 38013207
[TBL] [Abstract][Full Text] [Related]
18. Comparative Proteomics Enables Identification of Nonannotated Cold Shock Proteins in E. coli.
D'Lima NG; Khitun A; Rosenbloom AD; Yuan P; Gassaway BM; Barber KW; Rinehart J; Slavoff SA
J Proteome Res; 2017 Oct; 16(10):3722-3731. PubMed ID: 28861998
[TBL] [Abstract][Full Text] [Related]
19. The Cryptic Bacterial Microproteome.
Fesenko I; Sahakyan H; Shabalina SA; Koonin EV
bioRxiv; 2024 Feb; ():. PubMed ID: 38903115
[TBL] [Abstract][Full Text] [Related]
20. µProteInS-a proteogenomics pipeline for finding novel bacterial microproteins encoded by small ORFs.
de Souza EV; Dalberto PF; Machado VP; Canedo A; Saghatelian A; Machado P; Basso LA; Bizarro CV
Bioinformatics; 2022 Apr; 38(9):2612-2614. PubMed ID: 35188179
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]