These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 33064138)

  • 1. A practical guide to mechanistic systems modeling in biology using a logic-based approach.
    Niarakis A; Helikar T
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33064138
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Logical modelling of gene regulatory networks with GINsim.
    Chaouiya C; Naldi A; Thieffry D
    Methods Mol Biol; 2012; 804():463-79. PubMed ID: 22144167
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Logical modelling of regulatory networks with GINsim 2.3.
    Naldi A; Berenguier D; Fauré A; Lopez F; Thieffry D; Chaouiya C
    Biosystems; 2009 Aug; 97(2):134-9. PubMed ID: 19426782
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Introduction: Cancer Gene Networks.
    Clarke R
    Methods Mol Biol; 2017; 1513():1-9. PubMed ID: 27807826
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Systems biology by the rules: hybrid intelligent systems for pathway modeling and discovery.
    Bosl WJ
    BMC Syst Biol; 2007 Feb; 1():13. PubMed ID: 17408503
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Prediction of pairwise gene interaction using threshold logic.
    Gowda T; Vrudhula S; Kim S
    Ann N Y Acad Sci; 2009 Mar; 1158():276-86. PubMed ID: 19348649
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Modeling of gene regulatory network dynamics using threshold logic.
    Gowda T; Vrudhula S; Kim S
    Ann N Y Acad Sci; 2009 Mar; 1158():71-81. PubMed ID: 19348633
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A Computational Workflow for the Automated Generation of Models of Genetic Designs.
    Misirli G; Nguyen T; McLaughlin JA; Vaidyanathan P; Jones TS; Densmore D; Myers C; Wipat A
    ACS Synth Biol; 2019 Jul; 8(7):1548-1559. PubMed ID: 29782151
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs.
    Yeoh JW; Ng KBI; Teh AY; Zhang J; Chee WKD; Poh CL
    ACS Synth Biol; 2019 Jul; 8(7):1484-1497. PubMed ID: 31035759
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MONALISA for stochastic simulations of Petri net models of biochemical systems.
    Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
    BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Protocol for the Construction and Curation of Genome-Scale Integrated Metabolic and Regulatory Network Models.
    Chandrasekaran S
    Methods Mol Biol; 2019; 1927():203-214. PubMed ID: 30788794
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An algebra-based method for inferring gene regulatory networks.
    Vera-Licona P; Jarrah A; Garcia-Puente LD; McGee J; Laubenbacher R
    BMC Syst Biol; 2014 Mar; 8():37. PubMed ID: 24669835
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Boolean Dynamic Modeling Approaches to Study Plant Gene Regulatory Networks: Integration, Validation, and Prediction.
    Velderraín JD; Martínez-García JC; Álvarez-Buylla ER
    Methods Mol Biol; 2017; 1629():297-315. PubMed ID: 28623593
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Logical modeling of cell fate specification-Application to T cell commitment.
    Cacace E; Collombet S; Thieffry D
    Curr Top Dev Biol; 2020; 139():205-238. PubMed ID: 32450961
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genetic network analyzer: a tool for the qualitative modeling and simulation of bacterial regulatory networks.
    Batt G; Besson B; Ciron PE; de Jong H; Dumas E; Geiselmann J; Monte R; Monteiro PT; Page M; Rechenmann F; Ropers D
    Methods Mol Biol; 2012; 804():439-62. PubMed ID: 22144166
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Synchronous versus asynchronous modeling of gene regulatory networks.
    Garg A; Di Cara A; Xenarios I; Mendoza L; De Micheli G
    Bioinformatics; 2008 Sep; 24(17):1917-25. PubMed ID: 18614585
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.
    Dorier J; Crespo I; Niknejad A; Liechti R; Ebeling M; Xenarios I
    BMC Bioinformatics; 2016 Oct; 17(1):410. PubMed ID: 27716031
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Pillars of biology: Boolean modeling of gene-regulatory networks.
    Thakar J
    J Theor Biol; 2024 Feb; 578():111682. PubMed ID: 38008156
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Boolean factor graph model for biological systems: the yeast cell-cycle network.
    Kotiang S; Eslami A
    BMC Bioinformatics; 2021 Sep; 22(1):442. PubMed ID: 34535069
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Stochastic simulation algorithms for computational systems biology: Exact, approximate, and hybrid methods.
    Simoni G; Reali F; Priami C; Marchetti L
    Wiley Interdiscip Rev Syst Biol Med; 2019 Nov; 11(6):e1459. PubMed ID: 31260191
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.