These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
24. Chaining for accurate alignment of erroneous long reads to acyclic variation graphs. Ma J; Cáceres M; Salmela L; Mäkinen V; Tomescu AI Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37494467 [TBL] [Abstract][Full Text] [Related]
26. Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes. Chin CS; Behera S; Khalak A; Sedlazeck FJ; Sudmant PH; Wagner J; Zook JM Nat Methods; 2023 Aug; 20(8):1213-1221. PubMed ID: 37365340 [TBL] [Abstract][Full Text] [Related]
27. NovoGraph: Human genome graph construction from multiple long-read Biederstedt E; Oliver JC; Hansen NF; Jajoo A; Dunn N; Olson A; Busby B; Dilthey AT F1000Res; 2018; 7():1391. PubMed ID: 30613392 [TBL] [Abstract][Full Text] [Related]
28. Efficient short read mapping to a pangenome that is represented by a graph of ED strings. Büchler T; Olbrich J; Ohlebusch E Bioinformatics; 2023 May; 39(5):. PubMed ID: 37171844 [TBL] [Abstract][Full Text] [Related]
31. Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly. Schneider VA; Graves-Lindsay T; Howe K; Bouk N; Chen HC; Kitts PA; Murphy TD; Pruitt KD; Thibaud-Nissen F; Albracht D; Fulton RS; Kremitzki M; Magrini V; Markovic C; McGrath S; Steinberg KM; Auger K; Chow W; Collins J; Harden G; Hubbard T; Pelan S; Simpson JT; Threadgold G; Torrance J; Wood JM; Clarke L; Koren S; Boitano M; Peluso P; Li H; Chin CS; Phillippy AM; Durbin R; Wilson RK; Flicek P; Eichler EE; Church DM Genome Res; 2017 May; 27(5):849-864. PubMed ID: 28396521 [TBL] [Abstract][Full Text] [Related]
32. A Pangenome Approach to Detect and Genotype TE Insertion Polymorphisms. Groza C; Bourque G; Goubert C Methods Mol Biol; 2023; 2607():85-94. PubMed ID: 36449159 [TBL] [Abstract][Full Text] [Related]
33. De novo genome assembly of a Han Chinese male and genome-wide detection of structural variants using Oxford Nanopore sequencing. Cai R; Dong Y; Fang M; Guo C; Ma X Mol Genet Genomics; 2020 Jul; 295(4):871-876. PubMed ID: 32274588 [TBL] [Abstract][Full Text] [Related]