These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 33084875)

  • 1. A Cautionary Note on the Use of Genotype Callers in Phylogenomics.
    Duchen P; Salamin N
    Syst Biol; 2021 Jun; 70(4):844-854. PubMed ID: 33084875
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms.
    Greminger MP; Stölting KN; Nater A; Goossens B; Arora N; Bruggmann R; Patrignani A; Nussberger B; Sharma R; Kraus RH; Ambu LN; Singleton I; Chikhi L; van Schaik CP; Krützen M
    BMC Genomics; 2014 Jan; 15():16. PubMed ID: 24405840
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
    Shringarpure SS; Mathias RA; Hernandez RD; O'Connor TD; Szpiech ZA; Torres R; De La Vega FM; Bustamante CD; Barnes KC; Taub MA;
    Bioinformatics; 2017 Apr; 33(8):1147-1153. PubMed ID: 28035032
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Variant callers for next-generation sequencing data: a comparison study.
    Liu X; Han S; Wang Z; Gelernter J; Yang BZ
    PLoS One; 2013; 8(9):e75619. PubMed ID: 24086590
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals.
    Cheng AY; Teo YY; Ong RT
    Bioinformatics; 2014 Jun; 30(12):1707-13. PubMed ID: 24558117
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken.
    Ni G; Strom TM; Pausch H; Reimer C; Preisinger R; Simianer H; Erbe M
    BMC Genomics; 2015 Oct; 16():824. PubMed ID: 26486989
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Systematic comparison of variant calling pipelines using gold standard personal exome variants.
    Hwang S; Kim E; Lee I; Marcotte EM
    Sci Rep; 2015 Dec; 5():17875. PubMed ID: 26639839
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Benchmarking variant callers in next-generation and third-generation sequencing analysis.
    Pei S; Liu T; Ren X; Li W; Chen C; Xie Z
    Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32698196
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines.
    Bush SJ; Foster D; Eyre DW; Clark EL; De Maio N; Shaw LP; Stoesser N; Peto TEA; Crook DW; Walker AS
    Gigascience; 2020 Feb; 9(2):. PubMed ID: 32025702
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.
    Liao P; Satten GA; Hu YJ
    Genet Epidemiol; 2017 Jul; 41(5):375-387. PubMed ID: 28560825
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Quality control and integration of genotypes from two calling pipelines for whole genome sequence data in the Alzheimer's disease sequencing project.
    Naj AC; Lin H; Vardarajan BN; White S; Lancour D; Ma Y; Schmidt M; Sun F; Butkiewicz M; Bush WS; Kunkle BW; Malamon J; Amin N; Choi SH; Hamilton-Nelson KL; van der Lee SJ; Gupta N; Koboldt DC; Saad M; Wang B; Nato AQ; Sohi HK; Kuzma A; ; Wang LS; Cupples LA; van Duijn C; Seshadri S; Schellenberg GD; Boerwinkle E; Bis JC; Dupuis J; Salerno WJ; Wijsman EM; Martin ER; DeStefano AL
    Genomics; 2019 Jul; 111(4):808-818. PubMed ID: 29857119
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Impact of post-alignment processing in variant discovery from whole exome data.
    Tian S; Yan H; Kalmbach M; Slager SL
    BMC Bioinformatics; 2016 Oct; 17(1):403. PubMed ID: 27716037
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detailed comparison of two popular variant calling packages for exome and targeted exon studies.
    Warden CD; Adamson AW; Neuhausen SL; Wu X
    PeerJ; 2014; 2():e600. PubMed ID: 25289185
    [TBL] [Abstract][Full Text] [Related]  

  • 14. OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow.
    Bathke J; Lühken G
    BMC Bioinformatics; 2021 Aug; 22(1):402. PubMed ID: 34388963
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data.
    Liu Q; Guo Y; Li J; Long J; Zhang B; Shyr Y
    BMC Genomics; 2012; 13 Suppl 8(Suppl 8):S8. PubMed ID: 23281772
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An analytical workflow for accurate variant discovery in highly divergent regions.
    Tian S; Yan H; Neuhauser C; Slager SL
    BMC Genomics; 2016 Sep; 17(1):703. PubMed ID: 27590916
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The evaluation of Bcftools mpileup and GATK HaplotypeCaller for variant calling in non-human species.
    Lefouili M; Nam K
    Sci Rep; 2022 Jul; 12(1):11331. PubMed ID: 35790846
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Performance assessment of variant calling pipelines using human whole exome sequencing and simulated data.
    Kumaran M; Subramanian U; Devarajan B
    BMC Bioinformatics; 2019 Jun; 20(1):342. PubMed ID: 31208315
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Variant calling in low-coverage whole genome sequencing of a Native American population sample.
    Bizon C; Spiegel M; Chasse SA; Gizer IR; Li Y; Malc EP; Mieczkowski PA; Sailsbery JK; Wang X; Ehlers CL; Wilhelmsen KC
    BMC Genomics; 2014 Jan; 15():85. PubMed ID: 24479562
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments.
    Brouard JS; Schenkel F; Marete A; Bissonnette N
    J Anim Sci Biotechnol; 2019; 10():44. PubMed ID: 31249686
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.