247 related articles for article (PubMed ID: 33101371)
1. PacBio Long Reads Improve Metagenomic Assemblies, Gene Catalogs, and Genome Binning.
Xie H; Yang C; Sun Y; Igarashi Y; Jin T; Luo F
Front Genet; 2020; 11():516269. PubMed ID: 33101371
[TBL] [Abstract][Full Text] [Related]
2. Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data.
Frank JA; Pan Y; Tooming-Klunderud A; Eijsink VGH; McHardy AC; Nederbragt AJ; Pope PB
Sci Rep; 2016 May; 6():25373. PubMed ID: 27156482
[TBL] [Abstract][Full Text] [Related]
3. An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome.
Ferrarini M; Moretto M; Ward JA; Šurbanovski N; Stevanović V; Giongo L; Viola R; Cavalieri D; Velasco R; Cestaro A; Sargent DJ
BMC Genomics; 2013 Oct; 14():670. PubMed ID: 24083400
[TBL] [Abstract][Full Text] [Related]
4. PacBio But Not Illumina Technology Can Achieve Fast, Accurate and Complete Closure of the High GC, Complex
Teng JLL; Yeung ML; Chan E; Jia L; Lin CH; Huang Y; Tse H; Wong SSY; Sham PC; Lau SKP; Woo PCY
Front Microbiol; 2017; 8():1448. PubMed ID: 28824579
[TBL] [Abstract][Full Text] [Related]
5. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
García-López R; Vázquez-Castellanos JF; Moya A
Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
[TBL] [Abstract][Full Text] [Related]
6. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
Wang Y; Leung H; Yiu S; Chin F
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
[TBL] [Abstract][Full Text] [Related]
7. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
8. Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.
Derakhshani H; Bernier SP; Marko VA; Surette MG
BMC Genomics; 2020 Jul; 21(1):519. PubMed ID: 32727443
[TBL] [Abstract][Full Text] [Related]
9. Efficient and accurate whole genome assembly and methylome profiling of E. coli.
Powers JG; Weigman VJ; Shu J; Pufky JM; Cox D; Hurban P
BMC Genomics; 2013 Oct; 14(1):675. PubMed ID: 24090403
[TBL] [Abstract][Full Text] [Related]
10. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
11. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case.
Wang W; Schalamun M; Morales-Suarez A; Kainer D; Schwessinger B; Lanfear R
BMC Genomics; 2018 Dec; 19(1):977. PubMed ID: 30594129
[TBL] [Abstract][Full Text] [Related]
12. Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples.
Zaragoza-Solas A; Haro-Moreno JM; Rodriguez-Valera F; López-Pérez M
mSystems; 2022 Jun; 7(3):e0019222. PubMed ID: 35695508
[TBL] [Abstract][Full Text] [Related]
13. The long and short of it: benchmarking viromics using Illumina, Nanopore and PacBio sequencing technologies.
Cook R; Brown N; Rihtman B; Michniewski S; Redgwell T; Clokie M; Stekel DJ; Chen Y; Scanlan DJ; Hobman JL; Nelson A; Jones MA; Smith D; Millard A
Microb Genom; 2024 Feb; 10(2):. PubMed ID: 38376377
[TBL] [Abstract][Full Text] [Related]
14. Hybrid assembly of the large and highly repetitive genome of
Zimin AV; Puiu D; Luo MC; Zhu T; Koren S; Marçais G; Yorke JA; Dvořák J; Salzberg SL
Genome Res; 2017 May; 27(5):787-792. PubMed ID: 28130360
[TBL] [Abstract][Full Text] [Related]
15. Unveiling the transcriptomic complexity of Miscanthus sinensis using a combination of PacBio long read- and Illumina short read sequencing platforms.
Wang Y; Li X; Wang C; Gao L; Wu Y; Ni X; Sun J; Jiang J
BMC Genomics; 2021 Sep; 22(1):690. PubMed ID: 34551715
[TBL] [Abstract][Full Text] [Related]
16. A
Ramberg S; Høyheim B; Østbye TK; Andreassen R
Front Genet; 2021; 12():656334. PubMed ID: 33986770
[TBL] [Abstract][Full Text] [Related]
17. MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.
Huson DH; Albrecht B; Bağcı C; Bessarab I; Górska A; Jolic D; Williams RBH
Biol Direct; 2018 Apr; 13(1):6. PubMed ID: 29678199
[TBL] [Abstract][Full Text] [Related]
18. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
19. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information.
Kim HS; Jeon S; Kim C; Kim YK; Cho YS; Kim J; Blazyte A; Manica A; Lee S; Bhak J
Gigascience; 2019 Dec; 8(12):. PubMed ID: 31794015
[TBL] [Abstract][Full Text] [Related]
20. Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.
Faino L; Seidl MF; Datema E; van den Berg GC; Janssen A; Wittenberg AH; Thomma BP
mBio; 2015 Aug; 6(4):. PubMed ID: 26286689
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
