142 related articles for article (PubMed ID: 33111113)
1. Using Chromatin Accessibility to Delineate Therapeutic Subtypes in Pancreatic Cancer Patient-Derived Cell Lines.
Brunton H; Garner IM; Bailey UM; Upstill-Goddard R; Bailey PJ
STAR Protoc; 2020 Sep; 1(2):100079. PubMed ID: 33111113
[TBL] [Abstract][Full Text] [Related]
2. Analytical Approaches for ATAC-seq Data Analysis.
Smith JP; Sheffield NC
Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
[TBL] [Abstract][Full Text] [Related]
3. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
Elife; 2020 Nov; 9():. PubMed ID: 33191916
[TBL] [Abstract][Full Text] [Related]
4. Assay for Transposase-Accessible Chromatin Using Sequencing of Freshly Isolated Muscle Stem Cells.
Yekelchyk M; Guenther S; Braun T
Methods Mol Biol; 2023; 2640():397-412. PubMed ID: 36995609
[TBL] [Abstract][Full Text] [Related]
5. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
[TBL] [Abstract][Full Text] [Related]
6. Measuring Chromatin Accessibility: ATAC-Seq.
Sahu SK; Basu A; Tiwari VK
Methods Mol Biol; 2021; 2351():105-121. PubMed ID: 34382186
[TBL] [Abstract][Full Text] [Related]
7. Protocol for chromatin accessibility profiling of human endothelial cells cultured under fluid shear stress using ATAC-seq.
Raaz L; Mendez PL; Mundlos S; Knaus P; Jatzlau J
STAR Protoc; 2024 Mar; 5(1):102859. PubMed ID: 38329877
[TBL] [Abstract][Full Text] [Related]
8. Protocol for assaying chromatin accessibility using ATAC-seq in plants.
Wang FX; Shang GD; Wu LY; Mai YX; Gao J; Xu ZG; Wang JW
STAR Protoc; 2021 Mar; 2(1):100289. PubMed ID: 33532736
[TBL] [Abstract][Full Text] [Related]
9. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
Tatara M; Ikeda T; Namekawa SH; Maezawa S
Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
[TBL] [Abstract][Full Text] [Related]
10. Chromatin accessibility profiling by ATAC-seq.
Grandi FC; Modi H; Kampman L; Corces MR
Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
[TBL] [Abstract][Full Text] [Related]
11. Epigenetic Application of ATAC-Seq Based on Tn5 Transposase Purification Technology.
Li W; Tim Wu U; Cheng Y; Huang Y; Mao L; Sun M; Qiu C; Zhou L; Gao L
Genet Res (Camb); 2022; 2022():8429207. PubMed ID: 36062065
[TBL] [Abstract][Full Text] [Related]
12. Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
Marinov GK; Shipony Z
Methods Mol Biol; 2021; 2243():183-226. PubMed ID: 33606259
[TBL] [Abstract][Full Text] [Related]
13. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
[TBL] [Abstract][Full Text] [Related]
14. XL-DNase-seq: improved footprinting of dynamic transcription factors.
Oh KS; Ha J; Baek S; Sung MH
Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
[TBL] [Abstract][Full Text] [Related]
15. Mapping Chromatin Accessibility in Human Naïve Pluripotent Stem Cells Using ATAC-Seq.
Cinkornpumin JK; Hossain I; Pastor WA
Methods Mol Biol; 2022; 2416():201-211. PubMed ID: 34870838
[TBL] [Abstract][Full Text] [Related]
16. Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input.
Handa T; Harada A; Maehara K; Sato S; Nakao M; Goto N; Kurumizaka H; Ohkawa Y; Kimura H
Nat Protoc; 2020 Oct; 15(10):3334-3360. PubMed ID: 32807906
[TBL] [Abstract][Full Text] [Related]
17. Assay for Transposase-Accessible Chromatin-Sequencing Using
Bright AR; Veenstra GJC
Cold Spring Harb Protoc; 2019 Jan; 2019(1):. PubMed ID: 30042136
[TBL] [Abstract][Full Text] [Related]
18. Protocol to apply spike-in ChIP-seq to capture massive histone acetylation in human cells.
Wu D; Wang L; Huang H
STAR Protoc; 2021 Sep; 2(3):100681. PubMed ID: 34337446
[TBL] [Abstract][Full Text] [Related]
19. An optimized ATAC-seq protocol for genome-wide mapping of active regulatory elements in primary mouse cortical neurons.
Maor-Nof M; Shipony Z; Marinov GK; Greenleaf WJ; Gitler AD
STAR Protoc; 2021 Dec; 2(4):100854. PubMed ID: 34647036
[TBL] [Abstract][Full Text] [Related]
20. Optimized assay for transposase-accessible chromatin by sequencing (ATAC-seq) library preparation from adult Drosophila melanogaster neurons.
Merrill CB; Pabon MA; Montgomery AB; Rodan AR; Rothenfluh A
Sci Rep; 2022 Apr; 12(1):6043. PubMed ID: 35411004
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
