188 related articles for article (PubMed ID: 33111118)
1. Protocol for Identification and Removal of Doublets with DoubletDecon.
DePasquale EAK; Schnell D; Chetal K; Salomonis N
STAR Protoc; 2020 Sep; 1(2):100085. PubMed ID: 33111118
[TBL] [Abstract][Full Text] [Related]
2. DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data.
DePasquale EAK; Schnell DJ; Van Camp PJ; Valiente-Alandí Í; Blaxall BC; Grimes HL; Singh H; Salomonis N
Cell Rep; 2019 Nov; 29(6):1718-1727.e8. PubMed ID: 31693907
[TBL] [Abstract][Full Text] [Related]
3. Protocol for executing and benchmarking eight computational doublet-detection methods in single-cell RNA sequencing data analysis.
Xi NM; Li JJ
STAR Protoc; 2021 Sep; 2(3):100699. PubMed ID: 34382023
[TBL] [Abstract][Full Text] [Related]
4. Protocols for single-cell RNA-seq and spatial gene expression integration and interactive visualization.
Sona S; Bradley M; Ting AH
STAR Protoc; 2023 Mar; 4(1):102047. PubMed ID: 36853708
[TBL] [Abstract][Full Text] [Related]
5. Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC.
Abugessaisa I; Hasegawa A; Katayama S; Kere J; Kasukawa T
STAR Protoc; 2023 Mar; 4(1):102038. PubMed ID: 36853658
[TBL] [Abstract][Full Text] [Related]
6. Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing.
Lee H; Engin F
STAR Protoc; 2020 Dec; 1(3):100144. PubMed ID: 33377038
[TBL] [Abstract][Full Text] [Related]
7. Vaeda computationally annotates doublets in single-cell RNA sequencing data.
Schriever H; Kostka D
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36342203
[TBL] [Abstract][Full Text] [Related]
8. PieParty: visualizing cells from scRNA-seq data as pie charts.
Kurtenbach S; Dollar JJ; Cruz AM; Durante MA; Decatur CL; Harbour JW
Life Sci Alliance; 2021 May; 4(5):. PubMed ID: 33674364
[TBL] [Abstract][Full Text] [Related]
9. Miniaturization of Smart-seq2 for Single-Cell and Single-Nucleus RNA Sequencing.
Jaeger BN; Yángüez E; Gesuita L; Denoth-Lippuner A; Kruse M; Karayannis T; Jessberger S
STAR Protoc; 2020 Sep; 1(2):100081. PubMed ID: 33000004
[TBL] [Abstract][Full Text] [Related]
10. Dissociation of microdissected mouse brain tissue for artifact free single-cell RNA sequencing.
Liu L; Besson-Girard S; Ji H; Gehring K; Bulut B; Kaya T; Usifo F; Simons M; Gokce O
STAR Protoc; 2021 Jun; 2(2):100590. PubMed ID: 34159323
[TBL] [Abstract][Full Text] [Related]
11. Detection of cell markers from single cell RNA-seq with sc2marker.
Li R; Banjanin B; Schneider RK; Costa IG
BMC Bioinformatics; 2022 Jul; 23(1):276. PubMed ID: 35831796
[TBL] [Abstract][Full Text] [Related]
12. CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones.
Müller S; Cho A; Liu SJ; Lim DA; Diaz A
Bioinformatics; 2018 Sep; 34(18):3217-3219. PubMed ID: 29897414
[TBL] [Abstract][Full Text] [Related]
13. Double-jeopardy: scRNA-seq doublet/multiplet detection using multi-omic profiling.
Sun B; Bugarin-Estrada E; Overend LE; Walker CE; Tucci FA; Bashford-Rogers RJM
Cell Rep Methods; 2021 May; 1(1):None. PubMed ID: 34278374
[TBL] [Abstract][Full Text] [Related]
14. Computational workflow for investigating highly variable genes in single-cell RNA-seq across multiple time points and cell types.
Arora JK; Opasawatchai A; Teichmann SA; Matangkasombut P; Charoensawan V
STAR Protoc; 2023 Sep; 4(3):102387. PubMed ID: 37379219
[TBL] [Abstract][Full Text] [Related]
15. TARGET-Seq: A Protocol for High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing.
Rodriguez-Meira A; O'Sullivan J; Rahman H; Mead AJ
STAR Protoc; 2020 Dec; 1(3):100125. PubMed ID: 33377019
[TBL] [Abstract][Full Text] [Related]
16. Collection of cells for single-cell RNA sequencing using high-resolution fluorescence microscopy.
Segeren HA; Andree KC; Oomens L; Westendorp B
STAR Protoc; 2021 Sep; 2(3):100718. PubMed ID: 34401784
[TBL] [Abstract][Full Text] [Related]
17. Protocol for fast scRNA-seq raw data processing using scKB and non-arbitrary quality control with COPILOT.
Hsu CW; Shahan R; Nolan TM; Benfey PN; Ohler U
STAR Protoc; 2022 Dec; 3(4):101729. PubMed ID: 36181683
[TBL] [Abstract][Full Text] [Related]
18. An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data.
Mah CK; Wenzel AT; Juarez EF; Tabor T; Reich MM; Mesirov JP
F1000Res; 2018; 7():1306. PubMed ID: 31316748
[TBL] [Abstract][Full Text] [Related]
19. Data Analysis in Single-Cell Transcriptome Sequencing.
Gao S
Methods Mol Biol; 2018; 1754():311-326. PubMed ID: 29536451
[TBL] [Abstract][Full Text] [Related]
20. Spatial transcriptomics of the nematode
Schild ES; Mars J; Ebbing A; Vivié J; Betist M; Korswagen HC
STAR Protoc; 2021 Jun; 2(2):100411. PubMed ID: 33870220
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
