These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
131 related articles for article (PubMed ID: 33111118)
1. Protocol for Identification and Removal of Doublets with DoubletDecon. DePasquale EAK; Schnell D; Chetal K; Salomonis N STAR Protoc; 2020 Sep; 1(2):100085. PubMed ID: 33111118 [TBL] [Abstract][Full Text] [Related]
3. Protocol for executing and benchmarking eight computational doublet-detection methods in single-cell RNA sequencing data analysis. Xi NM; Li JJ STAR Protoc; 2021 Sep; 2(3):100699. PubMed ID: 34382023 [TBL] [Abstract][Full Text] [Related]
4. Protocols for single-cell RNA-seq and spatial gene expression integration and interactive visualization. Sona S; Bradley M; Ting AH STAR Protoc; 2023 Mar; 4(1):102047. PubMed ID: 36853708 [TBL] [Abstract][Full Text] [Related]
5. Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC. Abugessaisa I; Hasegawa A; Katayama S; Kere J; Kasukawa T STAR Protoc; 2023 Mar; 4(1):102038. PubMed ID: 36853658 [TBL] [Abstract][Full Text] [Related]
6. Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing. Lee H; Engin F STAR Protoc; 2020 Dec; 1(3):100144. PubMed ID: 33377038 [TBL] [Abstract][Full Text] [Related]
7. Protocol for analysis of single-cell sequencing data by Seqtometry. Kousnetsov R; Hawiger D STAR Protoc; 2024 Sep; 5(3):103209. PubMed ID: 39096493 [TBL] [Abstract][Full Text] [Related]
8. PieParty: visualizing cells from scRNA-seq data as pie charts. Kurtenbach S; Dollar JJ; Cruz AM; Durante MA; Decatur CL; Harbour JW Life Sci Alliance; 2021 May; 4(5):. PubMed ID: 33674364 [TBL] [Abstract][Full Text] [Related]
9. Miniaturization of Smart-seq2 for Single-Cell and Single-Nucleus RNA Sequencing. Jaeger BN; Yángüez E; Gesuita L; Denoth-Lippuner A; Kruse M; Karayannis T; Jessberger S STAR Protoc; 2020 Sep; 1(2):100081. PubMed ID: 33000004 [TBL] [Abstract][Full Text] [Related]
11. Detection of cell markers from single cell RNA-seq with sc2marker. Li R; Banjanin B; Schneider RK; Costa IG BMC Bioinformatics; 2022 Jul; 23(1):276. PubMed ID: 35831796 [TBL] [Abstract][Full Text] [Related]
12. Dissociation of microdissected mouse brain tissue for artifact free single-cell RNA sequencing. Liu L; Besson-Girard S; Ji H; Gehring K; Bulut B; Kaya T; Usifo F; Simons M; Gokce O STAR Protoc; 2021 Jun; 2(2):100590. PubMed ID: 34159323 [TBL] [Abstract][Full Text] [Related]
13. Protocol to achieve high-resolution single-cell transcriptomics of cardiomyocytes in multiple species. Ellman DG; Bjerre FA; Bak ST; Mathiesen SB; Harvald EB; Jensen CH; Andersen DC STAR Protoc; 2024 Sep; 5(3):103194. PubMed ID: 39096494 [TBL] [Abstract][Full Text] [Related]
14. CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones. Müller S; Cho A; Liu SJ; Lim DA; Diaz A Bioinformatics; 2018 Sep; 34(18):3217-3219. PubMed ID: 29897414 [TBL] [Abstract][Full Text] [Related]
15. Collection of cells for single-cell RNA sequencing using high-resolution fluorescence microscopy. Segeren HA; Andree KC; Oomens L; Westendorp B STAR Protoc; 2021 Sep; 2(3):100718. PubMed ID: 34401784 [TBL] [Abstract][Full Text] [Related]
16. Computational workflow for investigating highly variable genes in single-cell RNA-seq across multiple time points and cell types. Arora JK; Opasawatchai A; Teichmann SA; Matangkasombut P; Charoensawan V STAR Protoc; 2023 Sep; 4(3):102387. PubMed ID: 37379219 [TBL] [Abstract][Full Text] [Related]
17. Protocol for fast scRNA-seq raw data processing using scKB and non-arbitrary quality control with COPILOT. Hsu CW; Shahan R; Nolan TM; Benfey PN; Ohler U STAR Protoc; 2022 Dec; 3(4):101729. PubMed ID: 36181683 [TBL] [Abstract][Full Text] [Related]