These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
156 related articles for article (PubMed ID: 33135733)
1. Maximum likelihood reconstruction of ancestral networks by integer linear programming. Rajan V; Zhang Z; Kingsford C; Zhang X Bioinformatics; 2021 May; 37(8):1083-1092. PubMed ID: 33135733 [TBL] [Abstract][Full Text] [Related]
2. A unified ILP framework for core ancestral genome reconstruction problems. Avdeyev P; Alexeev N; Rong Y; Alekseyev MA Bioinformatics; 2020 May; 36(10):2993-3003. PubMed ID: 32058559 [TBL] [Abstract][Full Text] [Related]
3. Predicting protein interactions via parsimonious network history inference. Patro R; Kingsford C Bioinformatics; 2013 Jul; 29(13):i237-46. PubMed ID: 23812989 [TBL] [Abstract][Full Text] [Related]
4. Chromosome structures: reduction of certain problems with unequal gene content and gene paralogs to integer linear programming. Lyubetsky V; Gershgorin R; Gorbunov K BMC Bioinformatics; 2017 Dec; 18(1):537. PubMed ID: 29212445 [TBL] [Abstract][Full Text] [Related]
5. Efficient Minimum Flow Decomposition via Integer Linear Programming. Dias FHC; Williams L; Mumey B; Tomescu AI J Comput Biol; 2022 Nov; 29(11):1252-1267. PubMed ID: 36260412 [TBL] [Abstract][Full Text] [Related]
6. Sequential computation of elementary modes and minimal cut sets in genome-scale metabolic networks using alternate integer linear programming. Song HS; Goldberg N; Mahajan A; Ramkrishna D Bioinformatics; 2017 Aug; 33(15):2345-2353. PubMed ID: 28369193 [TBL] [Abstract][Full Text] [Related]
7. Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming. Paszek J; Markin A; Górecki P; Eulenstein O J Comput Biol; 2021 Aug; 28(8):758-773. PubMed ID: 34125600 [TBL] [Abstract][Full Text] [Related]
8. Cophylogenetic Reconciliation with ILP. Wieseke N; Hartmann T; Bernt M; Middendorf M IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(6):1227-35. PubMed ID: 26671795 [TBL] [Abstract][Full Text] [Related]
9. Better ILP models for haplotype assembly. Etemadi M; Bagherian M; Chen ZZ; Wang L BMC Bioinformatics; 2018 Feb; 19(Suppl 1):52. PubMed ID: 29504891 [TBL] [Abstract][Full Text] [Related]
10. An ILP solution for the gene duplication problem. Chang WC; Burleigh GJ; Fernández-Baca DF; Eulenstein O BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S14. PubMed ID: 21342543 [TBL] [Abstract][Full Text] [Related]
11. Better ILP-Based Approaches to Haplotype Assembly. Chen ZZ; Deng F; Shen C; Wang Y; Wang L J Comput Biol; 2016 Jul; 23(7):537-52. PubMed ID: 27347882 [TBL] [Abstract][Full Text] [Related]
15. The evolutionary dynamics of protein-protein interaction networks inferred from the reconstruction of ancient networks. Jin Y; Turaev D; Weinmaier T; Rattei T; Makse HA PLoS One; 2013; 8(3):e58134. PubMed ID: 23526967 [TBL] [Abstract][Full Text] [Related]
16. An Integer Linear Programming Model to Optimize Coding DNA Sequences By Joint Control of Transcript Indicators. Arbib C; D'ascenzo A; Rossi F; Santoni D J Comput Biol; 2024 May; 31(5):416-428. PubMed ID: 38687334 [No Abstract] [Full Text] [Related]
17. A safety framework for flow decomposition problems via integer linear programming. Dias FHC; Cáceres M; Williams L; Mumey B; Tomescu AI Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37862229 [TBL] [Abstract][Full Text] [Related]
18. Maximum likelihood inference of the evolutionary history of a PPI network from the duplication history of its proteins. Li S; Choi KP; Wu T; Zhang L IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(6):1412-21. PubMed ID: 24407300 [TBL] [Abstract][Full Text] [Related]
19. Uncovering signal transduction networks from high-throughput data by integer linear programming. Zhao XM; Wang RS; Chen L; Aihara K Nucleic Acids Res; 2008 May; 36(9):e48. PubMed ID: 18411207 [TBL] [Abstract][Full Text] [Related]
20. Solving and analyzing side-chain positioning problems using linear and integer programming. Kingsford CL; Chazelle B; Singh M Bioinformatics; 2005 Apr; 21(7):1028-36. PubMed ID: 15546935 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]