These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

125 related articles for article (PubMed ID: 33161544)

  • 1. Peptide Nucleic Acid (PNA) Clamps to Reduce Co-amplification of Plant DNA During PCR Amplification of 16S rRNA Genes from Endophytic Bacteria.
    Kawasaki A; Ryan PR
    Methods Mol Biol; 2021; 2232():123-134. PubMed ID: 33161544
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies.
    Fitzpatrick CR; Lu-Irving P; Copeland J; Guttman DS; Wang PW; Baltrus DA; Dlugosch KM; Johnson MTJ
    Microbiome; 2018 Aug; 6(1):144. PubMed ID: 30121081
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Application of peptide nucleic acid (PNA)-PCR clamping technique to investigate the community structures of rhizobacteria associated with plant roots.
    Sakai M; Ikenaga M
    J Microbiol Methods; 2013 Mar; 92(3):281-8. PubMed ID: 23313555
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Peptide nucleic acid-mediated PCR clamping as a useful supplement in the determination of microbial diversity.
    von Wintzingerode F; Landt O; Ehrlich A; Göbel UB
    Appl Environ Microbiol; 2000 Feb; 66(2):549-57. PubMed ID: 10653717
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Design and application of specific 16S rDNA-targeted primers for assessing endophytic diversity in Dendrobium officinale using nested PCR-DGGE.
    Yu J; Zhou XF; Yang SJ; Liu WH; Hu XF
    Appl Microbiol Biotechnol; 2013 Nov; 97(22):9825-36. PubMed ID: 24127138
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identifying the plant-associated microbiome across aquatic and terrestrial environments: the effects of amplification method on taxa discovery.
    Jackrel SL; Owens SM; Gilbert JA; Pfister CA
    Mol Ecol Resour; 2017 Sep; 17(5):931-942. PubMed ID: 27997751
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Cultivation Versus Molecular Analysis of Banana (Musa sp.) Shoot-Tip Tissue Reveals Enormous Diversity of Normally Uncultivable Endophytic Bacteria.
    Thomas P; Sekhar AC
    Microb Ecol; 2017 May; 73(4):885-899. PubMed ID: 27833995
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A 16S rDNA PCR-based theoretical to actual delta approach on culturable mock communities revealed severe losses of diversity information.
    Dos Santos HRM; Argolo CS; Argôlo-Filho RC; Loguercio LL
    BMC Microbiol; 2019 Apr; 19(1):74. PubMed ID: 30961521
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A novel PCR-clamping assay reducing plant host DNA amplification significantly improves prokaryotic endo-microbiome community characterization.
    Lefèvre E; Gardner CM; Gunsch CK
    FEMS Microbiol Ecol; 2020 Jul; 96(7):. PubMed ID: 32490528
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Designing specific bacterial 16S primers to sequence and quantitate plant endo-bacteriome.
    Chen L; Zhang M; Liu D; Sun H; Wu J; Huo Y; Chen X; Fang R; Zhang L
    Sci China Life Sci; 2022 May; 65(5):1000-1013. PubMed ID: 34309738
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis.
    Sun L; Qiu F; Zhang X; Dai X; Dong X; Song W
    Microb Ecol; 2008 Apr; 55(3):415-24. PubMed ID: 17690836
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Assessing Bacterial and Fungal Diversity in the Plant Endosphere.
    Wemheuer B; Wemheuer F
    Methods Mol Biol; 2017; 1539():75-84. PubMed ID: 27900685
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation of a new primer combination to minimize plastid contamination in 16S rDNA metabarcoding analyses of alga-associated bacterial communities.
    Thomas F; Dittami SM; Brunet M; Le Duff N; Tanguy G; Leblanc C; Gobet A
    Environ Microbiol Rep; 2020 Feb; 12(1):30-37. PubMed ID: 31692275
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Affinity purification of DNA and RNA from environmental samples with peptide nucleic acid clamps.
    Chandler DP; Stults JR; Cebula S; Schuck BL; Weaver DW; Anderson KK; Egholm M; Brockman FJ
    Appl Environ Microbiol; 2000 Aug; 66(8):3438-45. PubMed ID: 10919804
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Mathematical modeling of 16S ribosomal DNA amplification reveals optimal conditions for the interrogation of complex microbial communities with phylogenetic microarrays.
    Paliy O; Foy BD
    Bioinformatics; 2011 Aug; 27(15):2134-40. PubMed ID: 21653518
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA.
    Duineveld BM; Kowalchuk GA; Keijzer A; van Elsas JD; van Veen JA
    Appl Environ Microbiol; 2001 Jan; 67(1):172-8. PubMed ID: 11133442
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Endophytic Bacterial Communities Associated with Roots and Leaves of Plants Growing in Chilean Extreme Environments.
    Zhang Q; Acuña JJ; Inostroza NG; Mora ML; Radic S; Sadowsky MJ; Jorquera MA
    Sci Rep; 2019 Mar; 9(1):4950. PubMed ID: 30894597
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Direct detection of bacterial pathogens in brain abscesses by polymerase chain reaction amplification and sequencing of partial 16S ribosomal deoxyribonucleic acid fragments.
    Tsai JC; Teng LJ; Hsueh PR
    Neurosurgery; 2004 Nov; 55(5):1154-62. PubMed ID: 15509322
    [TBL] [Abstract][Full Text] [Related]  

  • 19. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
    Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
    BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing.
    Poirier S; Rué O; Peguilhan R; Coeuret G; Zagorec M; Champomier-Vergès MC; Loux V; Chaillou S
    PLoS One; 2018; 13(9):e0204629. PubMed ID: 30252901
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.