BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

176 related articles for article (PubMed ID: 33169790)

  • 1. Special Care Is Needed in Applying Phylogenetic Comparative Methods to Gene Trees with Speciation and Duplication Nodes.
    Begum T; Robinson-Rechavi M
    Mol Biol Evol; 2021 Apr; 38(4):1614-1626. PubMed ID: 33169790
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Pairwise comparisons across species are problematic when analyzing functional genomic data.
    Dunn CW; Zapata F; Munro C; Siebert S; Hejnol A
    Proc Natl Acad Sci U S A; 2018 Jan; 115(3):E409-E417. PubMed ID: 29301966
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Testing for phylogenetic signal in comparative data: behavioral traits are more labile.
    Blomberg SP; Garland T; Ives AR
    Evolution; 2003 Apr; 57(4):717-45. PubMed ID: 12778543
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Patterns of gene evolution following duplications and speciations in vertebrates.
    David KT; Oaks JR; Halanych KM
    PeerJ; 2020; 8():e8813. PubMed ID: 32266119
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Ortholog-Finder: A Tool for Constructing an Ortholog Data Set.
    Horiike T; Minai R; Miyata D; Nakamura Y; Tateno Y
    Genome Biol Evol; 2016 Jan; 8(2):446-57. PubMed ID: 26782935
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Rate asymmetry after genome duplication causes substantial long-branch attraction artifacts in the phylogeny of Saccharomyces species.
    Fares MA; Byrne KP; Wolfe KH
    Mol Biol Evol; 2006 Feb; 23(2):245-53. PubMed ID: 16207937
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PlantOrDB: a genome-wide ortholog database for land plants and green algae.
    Li L; Ji G; Ye C; Shu C; Zhang J; Liang C
    BMC Plant Biol; 2015 Jun; 15():161. PubMed ID: 26112452
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Reconciliation with non-binary species trees.
    Vernot B; Stolzer M; Goldman A; Durand D
    J Comput Biol; 2008 Oct; 15(8):981-1006. PubMed ID: 18808330
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees.
    Marcet-Houben M; Gabaldón T
    Nucleic Acids Res; 2011 May; 39(10):e66. PubMed ID: 21335609
    [TBL] [Abstract][Full Text] [Related]  

  • 10. On the distribution of interspecies correlation for Markov models of character evolution on Yule trees.
    Mulder WH; Crawford FW
    J Theor Biol; 2015 Jan; 364():275-83. PubMed ID: 25240905
    [TBL] [Abstract][Full Text] [Related]  

  • 11. phyloXML: XML for evolutionary biology and comparative genomics.
    Han MV; Zmasek CM
    BMC Bioinformatics; 2009 Oct; 10():356. PubMed ID: 19860910
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
    McCormack JE; Huang H; Knowles LL
    Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting.
    Pollard DA; Iyer VN; Moses AM; Eisen MB
    PLoS Genet; 2006 Oct; 2(10):e173. PubMed ID: 17132051
    [TBL] [Abstract][Full Text] [Related]  

  • 14. OrthoParaMap: distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies.
    Cannon SB; Young ND
    BMC Bioinformatics; 2003 Sep; 4():35. PubMed ID: 12952558
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Efficient algorithms for reconciling gene trees and species networks via duplication and loss events.
    To TH; Scornavacca C
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S6. PubMed ID: 26449687
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes.
    Ruane S; Raxworthy CJ; Lemmon AR; Lemmon EM; Burbrink FT
    BMC Evol Biol; 2015 Oct; 15():221. PubMed ID: 26459325
    [TBL] [Abstract][Full Text] [Related]  

  • 17. OrthoFinder: phylogenetic orthology inference for comparative genomics.
    Emms DM; Kelly S
    Genome Biol; 2019 Nov; 20(1):238. PubMed ID: 31727128
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Phylogenomics with paralogs.
    Hellmuth M; Wieseke N; Lechner M; Lenhof HP; Middendorf M; Stadler PF
    Proc Natl Acad Sci U S A; 2015 Feb; 112(7):2058-63. PubMed ID: 25646426
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Phylogenetic and functional assessment of orthologs inference projects and methods.
    Altenhoff AM; Dessimoz C
    PLoS Comput Biol; 2009 Jan; 5(1):e1000262. PubMed ID: 19148271
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A decomposition theory for phylogenetic networks and incompatible characters.
    Gusfield D; Bansal V; Bafna V; Song YS
    J Comput Biol; 2007 Dec; 14(10):1247-72. PubMed ID: 18047426
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.