BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

187 related articles for article (PubMed ID: 33179042)

  • 21. Revised iCLIP-seq Protocol for Profiling RNA-protein Interaction Sites at Individual Nucleotide Resolution in Living Cells.
    Nabeel-Shah S; Greenblatt JF
    Bio Protoc; 2023 Jun; 13(11):e4688. PubMed ID: 37323634
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Leveraging cross-link modification events in CLIP-seq for motif discovery.
    Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
    Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
    [TBL] [Abstract][Full Text] [Related]  

  • 23. CLIPick: a sensitive peak caller for expression-based deconvolution of HITS-CLIP signals.
    Park S; Ahn SH; Cho ES; Cho YK; Jang ES; Chi SW
    Nucleic Acids Res; 2018 Nov; 46(21):11153-11168. PubMed ID: 30329090
    [TBL] [Abstract][Full Text] [Related]  

  • 24. A model-based approach to identify binding sites in CLIP-Seq data.
    Wang T; Chen B; Kim M; Xie Y; Xiao G
    PLoS One; 2014; 9(4):e93248. PubMed ID: 24714572
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Assessing Computational Steps for CLIP-Seq Data Analysis.
    Liu Q; Zhong X; Madison BB; Rustgi AK; Shyr Y
    Biomed Res Int; 2015; 2015():196082. PubMed ID: 26539468
    [TBL] [Abstract][Full Text] [Related]  

  • 26. PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks.
    Lin J; Zhang Y; Frankel WN; Ouyang Z
    PLoS Comput Biol; 2019 Aug; 15(8):e1007227. PubMed ID: 31425505
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Improved discovery of RNA-binding protein binding sites in eCLIP data using DEWSeq.
    Schwarzl T; Sahadevan S; Lang B; Miladi M; Backofen R; Huber W; Hentze MW; Tartaglia GG
    Nucleic Acids Res; 2024 Jan; 52(1):e1. PubMed ID: 37962298
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions.
    Van Nostrand EL; Huelga SC; Yeo GW
    Adv Exp Med Biol; 2016; 907():1-28. PubMed ID: 27256380
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Bioinformatic Analysis.
    Freeberg MA; Kim JK
    Methods Mol Biol; 2016; 1361():91-104. PubMed ID: 26483018
    [TBL] [Abstract][Full Text] [Related]  

  • 30. dCLIP: a computational approach for comparative CLIP-seq analyses.
    Wang T; Xie Y; Xiao G
    Genome Biol; 2014 Jan; 15(1):R11. PubMed ID: 24398258
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Analyzing RNA-Protein Interactions by Cross-Link Rates and CLIP-seq Libraries.
    Porter DF; Garg RM; Meyers RM; Miao W; Ducoli L; Zarnegar BJ; Khavari PA
    Curr Protoc; 2023 Jan; 3(1):e659. PubMed ID: 36705610
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs.
    Katsantoni M; van Nimwegen E; Zavolan M
    Genome Biol; 2023 Apr; 24(1):77. PubMed ID: 37069586
    [TBL] [Abstract][Full Text] [Related]  

  • 33. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
    Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
    Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Recent computational developments on CLIP-seq data analysis and microRNA targeting implications.
    Bottini S; Pratella D; Grandjean V; Repetto E; Trabucchi M
    Brief Bioinform; 2018 Nov; 19(6):1290-1301. PubMed ID: 28605404
    [TBL] [Abstract][Full Text] [Related]  

  • 35. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.
    Li JH; Liu S; Zhou H; Qu LH; Yang JH
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D92-7. PubMed ID: 24297251
    [TBL] [Abstract][Full Text] [Related]  

  • 36. CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data.
    Shah A; Qian Y; Weyn-Vanhentenryck SM; Zhang C
    Bioinformatics; 2017 Feb; 33(4):566-567. PubMed ID: 27797762
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Multiobjective Genome-Wide RNA-Binding Event Identification From CLIP-Seq Data.
    Li X; Zhang S; Wong KC
    IEEE Trans Cybern; 2021 Dec; 51(12):5811-5824. PubMed ID: 31940583
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Design and bioinformatics analysis of genome-wide CLIP experiments.
    Wang T; Xiao G; Chu Y; Zhang MQ; Corey DR; Xie Y
    Nucleic Acids Res; 2015 Jun; 43(11):5263-74. PubMed ID: 25958398
    [TBL] [Abstract][Full Text] [Related]  

  • 39. htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets.
    Sahadevan S; Sekaran T; Ashaf N; Fritz M; Hentze MW; Huber W; Schwarzl T
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394253
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
    Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
    Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.