These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

146 related articles for article (PubMed ID: 33199699)

  • 1. GIANT: galaxy-based tool for interactive analysis of transcriptomic data.
    Vandel J; Gheeraert C; Staels B; Eeckhoute J; Lefebvre P; Dubois-Chevalier J
    Sci Rep; 2020 Nov; 10(1):19835. PubMed ID: 33199699
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis.
    Blanck S; Marot G
    Gigascience; 2019 Feb; 8(2):. PubMed ID: 30698691
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational solutions for omics data.
    Berger B; Peng J; Singh M
    Nat Rev Genet; 2013 May; 14(5):333-46. PubMed ID: 23594911
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project.
    Amrit FRG; Ghazi A
    J Vis Exp; 2017 Apr; (122):. PubMed ID: 28448031
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Importing ArrayExpress datasets into R/Bioconductor.
    Kauffmann A; Rayner TF; Parkinson H; Kapushesky M; Lukk M; Brazma A; Huber W
    Bioinformatics; 2009 Aug; 25(16):2092-4. PubMed ID: 19505942
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.
    Guzzi PH; Cannataro M
    Comput Methods Programs Biomed; 2013 Aug; 111(2):402-9. PubMed ID: 23731720
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data.
    Friedman BA; Maniatis T
    Genome Biol; 2011 Jul; 12(7):R69. PubMed ID: 21797991
    [TBL] [Abstract][Full Text] [Related]  

  • 8. QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and Informatics.
    Kumar P; Panigrahi P; Johnson J; Weber WJ; Mehta S; Sajulga R; Easterly C; Crooker BA; Heydarian M; Anamika K; Griffin TJ; Jagtap PD
    J Proteome Res; 2019 Feb; 18(2):782-790. PubMed ID: 30582332
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Differential Expression Analysis of RNA-seq Reads: Overview, Taxonomy, and Tools.
    Chowdhury HA; Bhattacharyya DK; Kalita JK
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(2):566-586. PubMed ID: 30281477
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Storing, linking, and mining microarray databases using SRS.
    Veldhoven A; de Lange D; Smid M; de Jager V; Kors JA; Jenster G
    BMC Bioinformatics; 2005 Jul; 6():192. PubMed ID: 16048644
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data.
    Mah CK; Wenzel AT; Juarez EF; Tabor T; Reich MM; Mesirov JP
    F1000Res; 2018; 7():1306. PubMed ID: 31316748
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis.
    Legendre R; Baudin-Baillieu A; Hatin I; Namy O
    Bioinformatics; 2015 Aug; 31(15):2586-8. PubMed ID: 25812744
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data.
    Fontoura CA; Castellani G; Mombach JC
    Comput Biol Med; 2016 Nov; 78():76-80. PubMed ID: 27665533
    [TBL] [Abstract][Full Text] [Related]  

  • 15. mu-CS: an extension of the TM4 platform to manage Affymetrix binary data.
    Guzzi PH; Cannataro M
    BMC Bioinformatics; 2010 Jun; 11():315. PubMed ID: 20537149
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Handling missing DNA microarray data by kriging estimators.
    Pham TD
    Int J Bioinform Res Appl; 2006; 2(2):177-92. PubMed ID: 18048161
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways.
    Garrido-Rodriguez M; Lopez-Lopez D; Ortuno FM; Peña-Chilet M; Muñoz E; Calzado MA; Dopazo J
    PLoS Comput Biol; 2021 Feb; 17(2):e1008748. PubMed ID: 33571195
    [TBL] [Abstract][Full Text] [Related]  

  • 18. iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data.
    Ge SX; Son EW; Yao R
    BMC Bioinformatics; 2018 Dec; 19(1):534. PubMed ID: 30567491
    [TBL] [Abstract][Full Text] [Related]  

  • 19. covRNA: discovering covariate associations in large-scale gene expression data.
    Urban L; Remmele CW; Dittrich M; Schwarz RF; Müller T
    BMC Res Notes; 2020 Feb; 13(1):92. PubMed ID: 32093752
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Gene Expression Mining in Type 2 Diabetes Research.
    Dunbar DR
    Methods Mol Biol; 2020; 2076():109-117. PubMed ID: 31586324
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.