These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. MAGNAMWAR: an R package for genome-wide association studies of bacterial orthologs. Sexton CE; Smith HZ; Newell PD; Douglas AE; Chaston JM Bioinformatics; 2018 Jun; 34(11):1951-1952. PubMed ID: 29342236 [TBL] [Abstract][Full Text] [Related]
5. snpGeneSets: An R Package for Genome-Wide Study Annotation. Mei H; Li L; Jiang F; Simino J; Griswold M; Mosley T; Liu S G3 (Bethesda); 2016 Dec; 6(12):4087-4095. PubMed ID: 27807048 [TBL] [Abstract][Full Text] [Related]
6. Bacterial genome-wide association study: methodologies and applications. Yang C; Yang RF; Cui Y Yi Chuan; 2018 Jan; 40(1):57-65. PubMed ID: 29367193 [TBL] [Abstract][Full Text] [Related]
8. The advent of genome-wide association studies for bacteria. Chen PE; Shapiro BJ Curr Opin Microbiol; 2015 Jun; 25():17-24. PubMed ID: 25835153 [TBL] [Abstract][Full Text] [Related]
9. A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination. Collins C; Didelot X PLoS Comput Biol; 2018 Feb; 14(2):e1005958. PubMed ID: 29401456 [TBL] [Abstract][Full Text] [Related]
10. Fast computation for genome-wide association studies using boosted one-step statistics. Voorman A; Rice K; Lumley T Bioinformatics; 2012 Jul; 28(14):1818-22. PubMed ID: 22592383 [TBL] [Abstract][Full Text] [Related]
11. Genome-Wide Association Analyses in the Model Rhizobium Epstein B; Abou-Shanab RAI; Shamseldin A; Taylor MR; Guhlin J; Burghardt LT; Nelson M; Sadowsky MJ; Tiffin P mSphere; 2018 Oct; 3(5):. PubMed ID: 30355664 [TBL] [Abstract][Full Text] [Related]
12. bGWAS: an R package to perform Bayesian genome wide association studies. Mounier N; Kutalik Z Bioinformatics; 2020 Aug; 36(15):4374-4376. PubMed ID: 32470106 [TBL] [Abstract][Full Text] [Related]
13. Phylogenetic Methods for Genome-Wide Association Studies in Bacteria. Didelot X Methods Mol Biol; 2021; 2242():205-220. PubMed ID: 33961226 [TBL] [Abstract][Full Text] [Related]
14. Sketching algorithms for genomic data analysis and querying in a secure enclave. Kockan C; Zhu K; Dokmai N; Karpov N; Kulekci MO; Woodruff DP; Sahinalp SC Nat Methods; 2020 Mar; 17(3):295-301. PubMed ID: 32132732 [TBL] [Abstract][Full Text] [Related]