652 related articles for article (PubMed ID: 33208514)
1. Assessment of
Hugerth LW; Pereira M; Zha Y; Seifert M; Kaldhusdal V; Boulund F; Krog MC; Bashir Z; Hamsten M; Fransson E; Svarre-Nielsen H; Schuppe-Koistinen I; Engstrand L
mSphere; 2020 Nov; 5(6):. PubMed ID: 33208514
[TBL] [Abstract][Full Text] [Related]
2. Species-level classification of the vaginal microbiome.
Fettweis JM; Serrano MG; Sheth NU; Mayer CM; Glascock AL; Brooks JP; Jefferson KK; ; Buck GA
BMC Genomics; 2012; 13 Suppl 8(Suppl 8):S17. PubMed ID: 23282177
[TBL] [Abstract][Full Text] [Related]
3. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
[TBL] [Abstract][Full Text] [Related]
4. Evaluation of Host Depletion and Extraction Methods for Shotgun Metagenomic Analysis of Bovine Vaginal Samples.
Ong CT; Boe-Hansen G; Ross EM; Blackall PJ; Turni C; Hayes BJ; Tabor AE
Microbiol Spectr; 2022 Apr; 10(2):e0041221. PubMed ID: 35404108
[TBL] [Abstract][Full Text] [Related]
5. Evaluation of Methods for the Extraction of Microbial DNA From Vaginal Swabs Used for Microbiome Studies.
Mattei V; Murugesan S; Al Hashmi M; Mathew R; James N; Singh P; Kumar M; Lakshmanan AP; Terranegra A; Al Khodor S; Tomei S
Front Cell Infect Microbiol; 2019; 9():197. PubMed ID: 31245304
[No Abstract] [Full Text] [Related]
6. Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.
Ziesemer KA; Mann AE; Sankaranarayanan K; Schroeder H; Ozga AT; Brandt BW; Zaura E; Waters-Rist A; Hoogland M; Salazar-García DC; Aldenderfer M; Speller C; Hendy J; Weston DA; MacDonald SJ; Thomas GH; Collins MJ; Lewis CM; Hofman C; Warinner C
Sci Rep; 2015 Nov; 5():16498. PubMed ID: 26563586
[TBL] [Abstract][Full Text] [Related]
7. In Silico and Experimental Evaluation of Primer Sets for Species-Level Resolution of the Vaginal Microbiota Using 16S Ribosomal RNA Gene Sequencing.
Van Der Pol WJ; Kumar R; Morrow CD; Blanchard EE; Taylor CM; Martin DH; Lefkowitz EJ; Muzny CA
J Infect Dis; 2019 Jan; 219(2):305-314. PubMed ID: 30535155
[TBL] [Abstract][Full Text] [Related]
8. An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.
O'Sullivan DM; Doyle RM; Temisak S; Redshaw N; Whale AS; Logan G; Huang J; Fischer N; Amos GCA; Preston MD; Marchesi JR; Wagner J; Parkhill J; Motro Y; Denise H; Finn RD; Harris KA; Kay GL; O'Grady J; Ransom-Jones E; Wu H; Laing E; Studholme DJ; Benavente ED; Phelan J; Clark TG; Moran-Gilad J; Huggett JF
Sci Rep; 2021 May; 11(1):10590. PubMed ID: 34012005
[TBL] [Abstract][Full Text] [Related]
9. Understanding and interpreting community sequencing measurements of the vaginal microbiome.
Berman HL; McLaren MR; Callahan BJ
BJOG; 2020 Jan; 127(2):139-146. PubMed ID: 31597208
[TBL] [Abstract][Full Text] [Related]
10. Vaginal Microbiome Metagenome Inference Accuracy: Differential Measurement Error according to Community Composition.
Carter KA; Fodor AA; Balkus JE; Zhang A; Serrano MG; Buck GA; Engel SM; Wu MC; Sun S
mSystems; 2023 Apr; 8(2):e0100322. PubMed ID: 36975801
[TBL] [Abstract][Full Text] [Related]
11. Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats.
Zhang W; Fan X; Shi H; Li J; Zhang M; Zhao J; Su X
Microbiol Spectr; 2023 Jun; 11(3):e0056323. PubMed ID: 37102867
[TBL] [Abstract][Full Text] [Related]
12. Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data.
Gehrig JL; Portik DM; Driscoll MD; Jackson E; Chakraborty S; Gratalo D; Ashby M; Valladares R
Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35302439
[TBL] [Abstract][Full Text] [Related]
13. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
Wagner J; Coupland P; Browne HP; Lawley TD; Francis SC; Parkhill J
BMC Microbiol; 2016 Nov; 16(1):274. PubMed ID: 27842515
[TBL] [Abstract][Full Text] [Related]
14. Shotgun sequencing of the vaginal microbiome reveals both a species and functional potential signature of preterm birth.
Feehily C; Crosby D; Walsh CJ; Lawton EM; Higgins S; McAuliffe FM; Cotter PD
NPJ Biofilms Microbiomes; 2020 Nov; 6(1):50. PubMed ID: 33184260
[TBL] [Abstract][Full Text] [Related]
15. Comparison Between Full-Length 16S rRNA Metabarcoding and Whole Metagenome Sequencing Suggests the Use of Either Is Suitable for Large-Scale Microbiome Studies.
Rubiola S; Macori G; Civera T; Fanning S; Mitchell M; Chiesa F
Foodborne Pathog Dis; 2022 Jul; 19(7):495-504. PubMed ID: 35819265
[TBL] [Abstract][Full Text] [Related]
16. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
[TBL] [Abstract][Full Text] [Related]
17. Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.
Ranjan R; Rani A; Metwally A; McGee HS; Perkins DL
Biochem Biophys Res Commun; 2016 Jan; 469(4):967-77. PubMed ID: 26718401
[TBL] [Abstract][Full Text] [Related]
18. A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis.
Whelan FJ; Surette MG
Microbiome; 2017 Aug; 5(1):100. PubMed ID: 28807046
[TBL] [Abstract][Full Text] [Related]
19. Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms.
Rausch P; Rühlemann M; Hermes BM; Doms S; Dagan T; Dierking K; Domin H; Fraune S; von Frieling J; Hentschel U; Heinsen FA; Höppner M; Jahn MT; Jaspers C; Kissoyan KAB; Langfeldt D; Rehman A; Reusch TBH; Roeder T; Schmitz RA; Schulenburg H; Soluch R; Sommer F; Stukenbrock E; Weiland-Bräuer N; Rosenstiel P; Franke A; Bosch T; Baines JF
Microbiome; 2019 Sep; 7(1):133. PubMed ID: 31521200
[TBL] [Abstract][Full Text] [Related]
20. Current challenges and best-practice protocols for microbiome analysis.
Bharti R; Grimm DG
Brief Bioinform; 2021 Jan; 22(1):178-193. PubMed ID: 31848574
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]