123 related articles for article (PubMed ID: 33211099)
1. Proteome-Scale Detection of Differential Conservation Patterns at Protein and Subprotein Levels with BLUR.
Defosset A; Kress A; Nevers Y; Ripp R; Thompson JD; Poch O; Lecompte O
Genome Biol Evol; 2021 Jan; 13(1):. PubMed ID: 33211099
[TBL] [Abstract][Full Text] [Related]
2. PROBE: analysis and visualization of protein block-level evolution.
Kress A; Lecompte O; Poch O; Thompson JD
Bioinformatics; 2018 Oct; 34(19):3390-3392. PubMed ID: 29741582
[TBL] [Abstract][Full Text] [Related]
3. OrthoInspector 3.0: open portal for comparative genomics.
Nevers Y; Kress A; Defosset A; Ripp R; Linard B; Thompson JD; Poch O; Lecompte O
Nucleic Acids Res; 2019 Jan; 47(D1):D411-D418. PubMed ID: 30380106
[TBL] [Abstract][Full Text] [Related]
4. OrthoGNC: A Software for Accurate Identification of Orthologs Based on Gene Neighborhood Conservation.
Jahangiri-Tazehkand S; Wong L; Eslahchi C
Genomics Proteomics Bioinformatics; 2017 Dec; 15(6):361-370. PubMed ID: 29133277
[TBL] [Abstract][Full Text] [Related]
5. Genome trees constructed using five different approaches suggest new major bacterial clades.
Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
[TBL] [Abstract][Full Text] [Related]
6. ITEP: an integrated toolkit for exploration of microbial pan-genomes.
Benedict MN; Henriksen JR; Metcalf WW; Whitaker RJ; Price ND
BMC Genomics; 2014 Jan; 15():8. PubMed ID: 24387194
[TBL] [Abstract][Full Text] [Related]
7. Mulan: multiple-sequence local alignment and visualization for studying function and evolution.
Ovcharenko I; Loots GG; Giardine BM; Hou M; Ma J; Hardison RC; Stubbs L; Miller W
Genome Res; 2005 Jan; 15(1):184-94. PubMed ID: 15590941
[TBL] [Abstract][Full Text] [Related]
8. Genomics of the evolutionary process.
Clark AG
Trends Ecol Evol; 2006 Jun; 21(6):316-21. PubMed ID: 16769431
[TBL] [Abstract][Full Text] [Related]
9. Automatic clustering of orthologs and inparalogs shared by multiple proteomes.
Alexeyenko A; Tamas I; Liu G; Sonnhammer EL
Bioinformatics; 2006 Jul; 22(14):e9-15. PubMed ID: 16873526
[TBL] [Abstract][Full Text] [Related]
10. Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.
Yavatkar AS; Lin Y; Ross J; Fann Y; Brody T; Odenwald WF
BMC Genomics; 2008 Feb; 9():106. PubMed ID: 18307801
[TBL] [Abstract][Full Text] [Related]
11. A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies.
Shin J; Marx H; Richards A; Vaneechoutte D; Jayaraman D; Maeda J; Chakraborty S; Sussman M; Vandepoele K; Ané JM; Coon J; Roy S
Nucleic Acids Res; 2021 Jan; 49(1):e3. PubMed ID: 33219668
[TBL] [Abstract][Full Text] [Related]
12. Detection of orphan domains in Drosophila using "hydrophobic cluster analysis".
Bitard-Feildel T; Heberlein M; Bornberg-Bauer E; Callebaut I
Biochimie; 2015 Dec; 119():244-53. PubMed ID: 25736992
[TBL] [Abstract][Full Text] [Related]
13. MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony.
Diehl AG; Boyle AP
BMC Bioinformatics; 2020 Sep; 21(1):416. PubMed ID: 32962625
[TBL] [Abstract][Full Text] [Related]
14. SuperPartitions: detection and classification of orthologs.
Tekaia F; Yeramian E
Gene; 2012 Jan; 492(1):199-211. PubMed ID: 22056699
[TBL] [Abstract][Full Text] [Related]
15. Subtree power analysis and species selection for comparative genomics.
McAuliffe JD; Jordan MI; Pachter L
Proc Natl Acad Sci U S A; 2005 May; 102(22):7900-5. PubMed ID: 15911755
[TBL] [Abstract][Full Text] [Related]
16. Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.
Deutekom ES; Snel B; van Dam TJP
Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32935832
[TBL] [Abstract][Full Text] [Related]
17. Efficient parsimony-based methods for phylogenetic network reconstruction.
Jin G; Nakhleh L; Snir S; Tuller T
Bioinformatics; 2007 Jan; 23(2):e123-8. PubMed ID: 17237079
[TBL] [Abstract][Full Text] [Related]
18. Data mining for proteins characteristic of clades.
Bern M; Goldberg D; Lyashenko E
Nucleic Acids Res; 2006; 34(16):4342-53. PubMed ID: 16936320
[TBL] [Abstract][Full Text] [Related]
19. Evolution of protein phosphorylation across 18 fungal species.
Studer RA; Rodriguez-Mias RA; Haas KM; Hsu JI; Viéitez C; Solé C; Swaney DL; Stanford LB; Liachko I; Böttcher R; Dunham MJ; de Nadal E; Posas F; Beltrao P; Villén J
Science; 2016 Oct; 354(6309):229-232. PubMed ID: 27738172
[TBL] [Abstract][Full Text] [Related]
20. Genomic structure and expression of Jmjd6 and evolutionary analysis in the context of related JmjC domain containing proteins.
Hahn P; Böse J; Edler S; Lengeling A
BMC Genomics; 2008 Jun; 9():293. PubMed ID: 18564434
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
