151 related articles for article (PubMed ID: 33237313)
1. RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures.
Paladin L; Bevilacqua M; Errigo S; Piovesan D; Mičetić I; Necci M; Monzon AM; Fabre ML; Lopez JL; Nilsson JF; Rios J; Menna PL; Cabrera M; Buitron MG; Kulik MG; Fernandez-Alberti S; Fornasari MS; Parisi G; Lagares A; Hirsh L; Andrade-Navarro MA; Kajava AV; Tosatto SCE
Nucleic Acids Res; 2021 Jan; 49(D1):D452-D457. PubMed ID: 33237313
[TBL] [Abstract][Full Text] [Related]
2. RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures.
Paladin L; Hirsh L; Piovesan D; Andrade-Navarro MA; Kajava AV; Tosatto SC
Nucleic Acids Res; 2017 Jan; 45(D1):D308-D312. PubMed ID: 27899671
[TBL] [Abstract][Full Text] [Related]
3. RepeatsDB: a database of tandem repeat protein structures.
Di Domenico T; Potenza E; Walsh I; Parra RG; Giollo M; Minervini G; Piovesan D; Ihsan A; Ferrari C; Kajava AV; Tosatto SC
Nucleic Acids Res; 2014 Jan; 42(Database issue):D352-7. PubMed ID: 24311564
[TBL] [Abstract][Full Text] [Related]
4. RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins.
Hirsh L; Paladin L; Piovesan D; Tosatto SCE
Nucleic Acids Res; 2018 Jul; 46(W1):W402-W407. PubMed ID: 29746699
[TBL] [Abstract][Full Text] [Related]
5. Comparison of protein repeat classifications based on structure and sequence families.
Paladin L; Tosatto SC
Biochem Soc Trans; 2015 Oct; 43(5):832-7. PubMed ID: 26517890
[TBL] [Abstract][Full Text] [Related]
6. The Pfam protein families database in 2019.
El-Gebali S; Mistry J; Bateman A; Eddy SR; Luciani A; Potter SC; Qureshi M; Richardson LJ; Salazar GA; Smart A; Sonnhammer ELL; Hirsh L; Paladin L; Piovesan D; Tosatto SCE; Finn RD
Nucleic Acids Res; 2019 Jan; 47(D1):D427-D432. PubMed ID: 30357350
[TBL] [Abstract][Full Text] [Related]
7. Identification of repetitive units in protein structures with ReUPred.
Hirsh L; Piovesan D; Paladin L; Tosatto SC
Amino Acids; 2016 Jun; 48(6):1391-400. PubMed ID: 26898549
[TBL] [Abstract][Full Text] [Related]
8. Classification of β-hairpin repeat proteins.
Roche DB; Viet PD; Bakulina A; Hirsh L; Tosatto SCE; Kajava AV
J Struct Biol; 2018 Feb; 201(2):130-138. PubMed ID: 29017817
[TBL] [Abstract][Full Text] [Related]
9. The repetitive structure of DNA clamps: An overlooked protein tandem repeat.
Arrías PN; Monzon AM; Clementel D; Mozaffari S; Piovesan D; Kajava AV; Tosatto SCE
J Struct Biol; 2023 Sep; 215(3):108001. PubMed ID: 37467824
[TBL] [Abstract][Full Text] [Related]
10. DbStRiPs: Database of structural repeats in proteins.
Chakrabarty B; Parekh N
Protein Sci; 2022 Jan; 31(1):23-36. PubMed ID: 33641184
[TBL] [Abstract][Full Text] [Related]
11. ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins.
Luo H; Lin K; David A; Nijveen H; Leunissen JA
Nucleic Acids Res; 2012 Jan; 40(Database issue):D394-9. PubMed ID: 22102581
[TBL] [Abstract][Full Text] [Related]
12. TAPO: A combined method for the identification of tandem repeats in protein structures.
Do Viet P; Roche DB; Kajava AV
FEBS Lett; 2015 Sep; 589(19 Pt A):2611-9. PubMed ID: 26320412
[TBL] [Abstract][Full Text] [Related]
13. Pfam: The protein families database in 2021.
Mistry J; Chuguransky S; Williams L; Qureshi M; Salazar GA; Sonnhammer ELL; Tosatto SCE; Paladin L; Raj S; Richardson LJ; Finn RD; Bateman A
Nucleic Acids Res; 2021 Jan; 49(D1):D412-D419. PubMed ID: 33125078
[TBL] [Abstract][Full Text] [Related]
14. Daisy: An integrated repeat protein curation service.
Bezerra-Brandao M; Tunque Cahui RR; Hirsh L
J Struct Biol; 2023 Dec; 215(4):108033. PubMed ID: 37797915
[TBL] [Abstract][Full Text] [Related]
15. PRDB: Protein Repeat DataBase.
Jorda J; Baudrand T; Kajava AV
Proteomics; 2012 May; 12(9):1333-6. PubMed ID: 22589183
[TBL] [Abstract][Full Text] [Related]
16. PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank.
Choudhary P; Feng Z; Berrisford J; Chao H; Ikegawa Y; Peisach E; Piehl DW; Smith J; Tanweer A; Varadi M; Westbrook JD; Young JY; Patwardhan A; Morris KL; Hoch JC; Kurisu G; Velankar S; Burley SK
Database (Oxford); 2024 May; 2024():. PubMed ID: 38803272
[TBL] [Abstract][Full Text] [Related]
17. Self-analysis of repeat proteins reveals evolutionarily conserved patterns.
Merski M; Młynarczyk K; Ludwiczak J; Skrzeczkowski J; Dunin-Horkawicz S; Górna MW
BMC Bioinformatics; 2020 May; 21(1):179. PubMed ID: 32381046
[TBL] [Abstract][Full Text] [Related]
18. SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation.
Piovesan D; Profiti G; Martelli PL; Fariselli P; Fontanesi L; Casadio R
Database (Oxford); 2013; 2013():bat065. PubMed ID: 24065691
[TBL] [Abstract][Full Text] [Related]
19. PRIGSA2: Improved version of protein repeat identification by graph spectral analysis.
Chakrabarty B; Parekh N
J Biosci; 2020; 45():. PubMed ID: 32713858
[TBL] [Abstract][Full Text] [Related]
20. Identifying tandem Ankyrin repeats in protein structures.
Chakrabarty B; Parekh N
BMC Bioinformatics; 2014 Dec; 15(1):6599. PubMed ID: 25547411
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]