These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

188 related articles for article (PubMed ID: 33253170)

  • 21. swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.
    Chen L; Wu CT; Lin CH; Dai R; Liu C; Clarke R; Yu G; Van Eyk JE; Herrington DM; Wang Y
    Bioinformatics; 2022 Feb; 38(5):1403-1410. PubMed ID: 34904628
    [TBL] [Abstract][Full Text] [Related]  

  • 22. NITUMID: Nonnegative matrix factorization-based Immune-TUmor MIcroenvironment Deconvolution.
    Tang D; Park S; Zhao H
    Bioinformatics; 2020 Mar; 36(5):1344-1350. PubMed ID: 31593244
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares.
    Hao Y; Yan M; Heath BR; Lei YL; Xie Y
    PLoS Comput Biol; 2019 May; 15(5):e1006976. PubMed ID: 31059559
    [TBL] [Abstract][Full Text] [Related]  

  • 24. DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification.
    Decamps C; Arnaud A; Petitprez F; Ayadi M; Baurès A; Armenoult L; ; Escalera S; Guyon I; Nicolle R; Tomasini R; de Reyniès A; Cros J; Blum Y; Richard M
    BMC Bioinformatics; 2021 Oct; 22(1):473. PubMed ID: 34600479
    [TBL] [Abstract][Full Text] [Related]  

  • 25. An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples.
    Yadav VK; De S
    Brief Bioinform; 2015 Mar; 16(2):232-41. PubMed ID: 24562872
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Reference-free deconvolution, visualization and interpretation of complex DNA methylation data using DecompPipeline, MeDeCom and FactorViz.
    Scherer M; Nazarov PV; Toth R; Sahay S; Kaoma T; Maurer V; Vedeneev N; Plass C; Lengauer T; Walter J; Lutsik P
    Nat Protoc; 2020 Oct; 15(10):3240-3263. PubMed ID: 32978601
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A sequential Monte Carlo approach to gene expression deconvolution.
    Ogundijo OE; Wang X
    PLoS One; 2017; 12(10):e0186167. PubMed ID: 29049343
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Semi-CAM: A semi-supervised deconvolution method for bulk transcriptomic data with partial marker gene information.
    Dong L; Kollipara A; Darville T; Zou F; Zheng X
    Sci Rep; 2020 Mar; 10(1):5434. PubMed ID: 32214192
    [TBL] [Abstract][Full Text] [Related]  

  • 29. CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution.
    Wu CT; Du D; Chen L; Dai R; Liu C; Yu G; Bhardwaj S; Parker SJ; Zhang Z; Clarke R; Herrington DM; Wang Y
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38407991
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Modular within and between score for drug response prediction in cancer cell lines.
    Wang S; Li J
    Mol Omics; 2020 Feb; 16(1):31-38. PubMed ID: 31802092
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Statistical expression deconvolution from mixed tissue samples.
    Clarke J; Seo P; Clarke B
    Bioinformatics; 2010 Apr; 26(8):1043-9. PubMed ID: 20202973
    [TBL] [Abstract][Full Text] [Related]  

  • 32. InstaPrism: an R package for fast implementation of BayesPrism.
    Hu M; Chikina M
    Bioinformatics; 2024 Jul; 40(7):. PubMed ID: 38970377
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Decomprolute is a benchmarking platform designed for multiomics-based tumor deconvolution.
    Feng S; Calinawan A; Pugliese P; Wang P; Ceccarelli M; Petralia F; Gosline SJC
    Cell Rep Methods; 2024 Feb; 4(2):100708. PubMed ID: 38412834
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Characterizing Intra-Tumor Heterogeneity From Somatic Mutations Without Copy-Neutral Assumption.
    Ogundijo OE; Zhu K; Wang X; Anastassiou D
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2271-2280. PubMed ID: 32070995
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software.
    Decamps C; Privé F; Bacher R; Jost D; Waguet A; ; Houseman EA; Lurie E; Lutsik P; Milosavljevic A; Scherer M; Blum MGB; Richard M
    BMC Bioinformatics; 2020 Jan; 21(1):16. PubMed ID: 31931698
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Computational deconvolution of DNA methylation data from mixed DNA samples.
    Ferro Dos Santos MR; Giuili E; De Koker A; Everaert C; De Preter K
    Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38762790
    [TBL] [Abstract][Full Text] [Related]  

  • 37. PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions.
    Qiao W; Quon G; Csaszar E; Yu M; Morris Q; Zandstra PW
    PLoS Comput Biol; 2012; 8(12):e1002838. PubMed ID: 23284283
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Uncertainty quantification of reference-based cellular deconvolution algorithms.
    Vellame DS; Shireby G; MacCalman A; Dempster EL; Burrage J; Gorrie-Stone T; Schalkwyk LS; Mill J; Hannon E
    Epigenetics; 2023 Dec; 18(1):2137659. PubMed ID: 36539387
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Reference-free deconvolution of DNA methylation data and mediation by cell composition effects.
    Houseman EA; Kile ML; Christiani DC; Ince TA; Kelsey KT; Marsit CJ
    BMC Bioinformatics; 2016 Jun; 17():259. PubMed ID: 27358049
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Cell-type deconvolution from DNA methylation: a review of recent applications.
    Titus AJ; Gallimore RM; Salas LA; Christensen BC
    Hum Mol Genet; 2017 Oct; 26(R2):R216-R224. PubMed ID: 28977446
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.