These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
147 related articles for article (PubMed ID: 33261552)
1. Finding a suitable library size to call variants in RNA-Seq. Quaglieri A; Flensburg C; Speed TP; Majewski IJ BMC Bioinformatics; 2020 Dec; 21(1):553. PubMed ID: 33261552 [TBL] [Abstract][Full Text] [Related]
2. Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries. Wiens M; Farahani H; Scott RW; Underhill TM; Bashashati A Genome Res; 2024 Sep; 34(8):1196-1210. PubMed ID: 39147582 [TBL] [Abstract][Full Text] [Related]
3. Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data. Krøigård AB; Thomassen M; Lænkholm AV; Kruse TA; Larsen MJ PLoS One; 2016; 11(3):e0151664. PubMed ID: 27002637 [TBL] [Abstract][Full Text] [Related]
4. Comparing the performance of selected variant callers using synthetic data and genome segmentation. Bian X; Zhu B; Wang M; Hu Y; Chen Q; Nguyen C; Hicks B; Meerzaman D BMC Bioinformatics; 2018 Nov; 19(1):429. PubMed ID: 30453880 [TBL] [Abstract][Full Text] [Related]
9. Inconsistency and features of single nucleotide variants detected in whole exome sequencing versus transcriptome sequencing: A case study in lung cancer. O'Brien TD; Jia P; Xia J; Saxena U; Jin H; Vuong H; Kim P; Wang Q; Aryee MJ; Mino-Kenudson M; Engelman JA; Le LP; Iafrate AJ; Heist RS; Pao W; Zhao Z Methods; 2015 Jul; 83():118-27. PubMed ID: 25913717 [TBL] [Abstract][Full Text] [Related]
10. Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals. Cheng AY; Teo YY; Ong RT Bioinformatics; 2014 Jun; 30(12):1707-13. PubMed ID: 24558117 [TBL] [Abstract][Full Text] [Related]
11. Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers. Wang Q; Jia P; Li F; Chen H; Ji H; Hucks D; Dahlman KB; Pao W; Zhao Z Genome Med; 2013; 5(10):91. PubMed ID: 24112718 [TBL] [Abstract][Full Text] [Related]
13. Systematic comparative analysis of single-nucleotide variant detection methods from single-cell RNA sequencing data. Liu F; Zhang Y; Zhang L; Li Z; Fang Q; Gao R; Zhang Z Genome Biol; 2019 Nov; 20(1):242. PubMed ID: 31744515 [TBL] [Abstract][Full Text] [Related]
14. Detecting copy number alterations in RNA-Seq using SuperFreq. Flensburg C; Oshlack A; Majewski IJ Bioinformatics; 2021 Nov; 37(22):4023-4032. PubMed ID: 34132781 [TBL] [Abstract][Full Text] [Related]
15. VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research. Lai Z; Markovets A; Ahdesmaki M; Chapman B; Hofmann O; McEwen R; Johnson J; Dougherty B; Barrett JC; Dry JR Nucleic Acids Res; 2016 Jun; 44(11):e108. PubMed ID: 27060149 [TBL] [Abstract][Full Text] [Related]
16. Choice of library size normalization and statistical methods for differential gene expression analysis in balanced two-group comparisons for RNA-seq studies. Li X; Cooper NGF; O'Toole TE; Rouchka EC BMC Genomics; 2020 Jan; 21(1):75. PubMed ID: 31992223 [TBL] [Abstract][Full Text] [Related]
17. A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments. Bansal V BMC Bioinformatics; 2017 Mar; 18(Suppl 3):43. PubMed ID: 28361665 [TBL] [Abstract][Full Text] [Related]
19. Using RNA-Seq Data for the Detection of a Panel of Clinically Relevant Mutations. Wolff A; Perera-Bel J; Schildhaus HU; Homayounfar K; Schatlo B; Bleckmann A; Beißbarth T Stud Health Technol Inform; 2018; 253():217-221. PubMed ID: 30147077 [TBL] [Abstract][Full Text] [Related]
20. Improved SNV Discovery in Barcode-Stratified scRNA-seq Alignments. N M P; Liu H; Dillard C; Ibeawuchi H; Alsaeedy T; Chan H; Horvath AD Genes (Basel); 2021 Sep; 12(10):. PubMed ID: 34680953 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]