These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

332 related articles for article (PubMed ID: 33271988)

  • 21. PERHAPS: Paired-End short Reads-based HAPlotyping from next-generation Sequencing data.
    Huang J; Pallotti S; Zhou Q; Kleber M; Xin X; King DA; Napolioni V
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33285565
    [TBL] [Abstract][Full Text] [Related]  

  • 22. HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies.
    Edge P; Bafna V; Bansal V
    Genome Res; 2017 May; 27(5):801-812. PubMed ID: 27940952
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
    Bogaerts B; Van den Bossche A; Verhaegen B; Delbrassinne L; Mattheus W; Nouws S; Godfroid M; Hoffman S; Roosens NHC; De Keersmaecker SCJ; Vanneste K
    J Clin Microbiol; 2024 May; 62(5):e0157623. PubMed ID: 38441926
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Phased nanopore assembly with Shasta and modular graph phasing with GFAse.
    Lorig-Roach R; Meredith M; Monlong J; Jain M; Olsen HE; McNulty B; Porubsky D; Montague TG; Lucas JK; Condon C; Eizenga JM; Juul S; McKenzie SK; Simmonds SE; Park J; Asri M; Koren S; Eichler EE; Axel R; Martin B; Carnevali P; Miga KH; Paten B
    Genome Res; 2024 Apr; 34(3):454-468. PubMed ID: 38627094
    [TBL] [Abstract][Full Text] [Related]  

  • 25. NanoSim: nanopore sequence read simulator based on statistical characterization.
    Yang C; Chu J; Warren RL; Birol I
    Gigascience; 2017 Apr; 6(4):1-6. PubMed ID: 28327957
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Performance analysis of conventional and AI-based variant callers using short and long reads.
    Abdelwahab O; Belzile F; Torkamaneh D
    BMC Bioinformatics; 2023 Dec; 24(1):472. PubMed ID: 38097928
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Haplotype phasing in single-cell DNA-sequencing data.
    Satas G; Raphael BJ
    Bioinformatics; 2018 Jul; 34(13):i211-i217. PubMed ID: 29950014
    [TBL] [Abstract][Full Text] [Related]  

  • 28. PhaseME: Automatic rapid assessment of phasing quality and phasing improvement.
    Majidian S; Sedlazeck FJ
    Gigascience; 2020 Jul; 9(7):. PubMed ID: 32706368
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.
    Chen Z; Pham L; Wu TC; Mo G; Xia Y; Chang PL; Porter D; Phan T; Che H; Tran H; Bansal V; Shaffer J; Belda-Ferre P; Humphrey G; Knight R; Pevzner P; Pham S; Wang Y; Lei M
    Genome Res; 2020 Jun; 30(6):898-909. PubMed ID: 32540955
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.
    Kojima K; Nariai N; Mimori T; Takahashi M; Yamaguchi-Kabata Y; Sato Y; Nagasaki M
    Bioinformatics; 2013 Nov; 29(22):2835-43. PubMed ID: 24002111
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Implementation of Nanopore sequencing as a pragmatic workflow for copy number variant confirmation in the clinic.
    Greer SU; Botello J; Hongo D; Levy B; Shah P; Rabinowitz M; Miller DE; Im K; Kumar A
    J Transl Med; 2023 Jun; 21(1):378. PubMed ID: 37301971
    [TBL] [Abstract][Full Text] [Related]  

  • 32. ONT long-read WGS for variant discovery and orthogonal confirmation of short read WGS derived genetic variants in clinical genetic testing.
    Kaplun L; Krautz-Peterson G; Neerman N; Stanley C; Hussey S; Folwick M; McGarry A; Weiss S; Kaplun A
    Front Genet; 2023; 14():1145285. PubMed ID: 37152986
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Identity-by-state-based haplotyping expands the application of comprehensive preimplantation genetic testing.
    Ding J; Dimitriadou E; Tšuiko O; Destouni A; Melotte C; Van Den Bogaert K; Debrock S; Jatsenko T; Esteki MZ; Voet T; Peeraer K; Denayer E; Vermeesch JR
    Hum Reprod; 2020 Mar; 35(3):718-726. PubMed ID: 32198505
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Haplotyping Using Long-Range PCR and Nanopore Sequencing to Phase Variants: Lessons Learned From the ABCA4 Locus.
    McClinton B; Watson CM; Crinnion LA; McKibbin M; Ali M; Inglehearn CF; Toomes C
    Lab Invest; 2023 Aug; 103(8):100160. PubMed ID: 37088464
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Nanopore sequencing with unique molecular identifiers enables accurate mutation analysis and haplotyping in the complex lipoprotein(a) KIV-2 VNTR.
    Amstler S; Streiter G; Pfurtscheller C; Forer L; Di Maio S; Weissensteiner H; Paulweber B; Schönherr S; Kronenberg F; Coassin S
    Genome Med; 2024 Oct; 16(1):117. PubMed ID: 39380090
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Nanopanel2 calls phased low-frequency variants in Nanopore panel sequencing data.
    Popitsch N; Preuner S; Lion T
    Bioinformatics; 2021 Dec; 37(24):4620-4625. PubMed ID: 34270680
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Multi-centre evaluation of a comprehensive preimplantation genetic test through haplotyping-by-sequencing.
    Masset H; Zamani Esteki M; Dimitriadou E; Dreesen J; Debrock S; Derhaag J; Derks K; Destouni A; Drüsedau M; Meekels J; Melotte C; Peeraer K; Tšuiko O; van Uum C; Allemeersch J; Devogelaere B; François KO; Happe S; Lorson D; Richards RL; Theuns J; Brunner H; de Die-Smulders C; Voet T; Paulussen A; Coonen E; Vermeesch JR
    Hum Reprod; 2019 Aug; 34(8):1608-1619. PubMed ID: 31348829
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Subtyping Evaluation of
    Xian Z; Li S; Mann DA; Huang Y; Xu F; Wu X; Tang S; Zhang G; Stevenson A; Ge C; Deng X
    Appl Environ Microbiol; 2022 Aug; 88(15):e0078522. PubMed ID: 35867567
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Rare variant phasing and haplotypic expression from RNA sequencing with phASER.
    Castel SE; Mohammadi P; Chung WK; Shen Y; Lappalainen T
    Nat Commun; 2016 Sep; 7():12817. PubMed ID: 27605262
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Comparison of Illumina and Oxford Nanopore Technology for genome analysis of Francisella tularensis, Bacillus anthracis, and Brucella suis.
    Linde J; Brangsch H; Hölzer M; Thomas C; Elschner MC; Melzer F; Tomaso H
    BMC Genomics; 2023 May; 24(1):258. PubMed ID: 37173617
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 17.