108 related articles for article (PubMed ID: 33289892)
1. Automated Removal of Non-homologous Sequence Stretches with PREQUAL.
Irisarri I; Burki F; Whelan S
Methods Mol Biol; 2021; 2231():147-162. PubMed ID: 33289892
[TBL] [Abstract][Full Text] [Related]
2. PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences.
Whelan S; Irisarri I; Burki F
Bioinformatics; 2018 Nov; 34(22):3929-3930. PubMed ID: 29868763
[TBL] [Abstract][Full Text] [Related]
3. Using hidden Markov models and observed evolution to annotate viral genomes.
McCauley S; Hein J
Bioinformatics; 2006 Jun; 22(11):1308-16. PubMed ID: 16613911
[TBL] [Abstract][Full Text] [Related]
4. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.
Thakur S; Guttman DS
BMC Bioinformatics; 2016 Jun; 17(1):260. PubMed ID: 27363390
[TBL] [Abstract][Full Text] [Related]
5. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
6. Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences.
Di Franco A; Poujol R; Baurain D; Philippe H
BMC Evol Biol; 2019 Jan; 19(1):21. PubMed ID: 30634908
[TBL] [Abstract][Full Text] [Related]
7. Aligning Protein-Coding Nucleotide Sequences with MACSE.
Ranwez V; Chantret N; Delsuc F
Methods Mol Biol; 2021; 2231():51-70. PubMed ID: 33289886
[TBL] [Abstract][Full Text] [Related]
8. Modeling sequencing errors by combining Hidden Markov models.
Lottaz C; Iseli C; Jongeneel CV; Bucher P
Bioinformatics; 2003 Oct; 19 Suppl 2():ii103-12. PubMed ID: 14534179
[TBL] [Abstract][Full Text] [Related]
9. Hidden Markov Models in Bioinformatics: SNV Inference from Next Generation Sequence.
Bian J; Zhou X
Methods Mol Biol; 2017; 1552():123-133. PubMed ID: 28224495
[TBL] [Abstract][Full Text] [Related]
10. Phylogenomics Using Transcriptome Data.
Cannon JT; Kocot KM
Methods Mol Biol; 2016; 1452():65-80. PubMed ID: 27460370
[TBL] [Abstract][Full Text] [Related]
11. ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences.
Iseli C; Jongeneel CV; Bucher P
Proc Int Conf Intell Syst Mol Biol; 1999; ():138-48. PubMed ID: 10786296
[TBL] [Abstract][Full Text] [Related]
12. Bioinformatics software for biologists in the genomics era.
Kumar S; Dudley J
Bioinformatics; 2007 Jul; 23(14):1713-7. PubMed ID: 17485425
[TBL] [Abstract][Full Text] [Related]
13. A greedy, graph-based algorithm for the alignment of multiple homologous gene lists.
Fostier J; Proost S; Dhoedt B; Saeys Y; Demeester P; Van de Peer Y; Vandepoele K
Bioinformatics; 2011 Mar; 27(6):749-56. PubMed ID: 21216775
[TBL] [Abstract][Full Text] [Related]
14. ExonHunter: a comprehensive approach to gene finding.
Brejová B; Brown DG; Li M; Vinar T
Bioinformatics; 2005 Jun; 21 Suppl 1():i57-65. PubMed ID: 15961499
[TBL] [Abstract][Full Text] [Related]
15. Blue: correcting sequencing errors using consensus and context.
Greenfield P; Duesing K; Papanicolaou A; Bauer DC
Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879
[TBL] [Abstract][Full Text] [Related]
16. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
17. Introduction to Hidden Markov Models and Its Applications in Biology.
Vijayabaskar MS
Methods Mol Biol; 2017; 1552():1-12. PubMed ID: 28224487
[TBL] [Abstract][Full Text] [Related]
18. Blockwise HMM computation for large-scale population genomic inference.
Paul JS; Song YS
Bioinformatics; 2012 Aug; 28(15):2008-15. PubMed ID: 22641715
[TBL] [Abstract][Full Text] [Related]
19. A generalization of the PST algorithm: modeling the sparse nature of protein sequences.
Leonardi FG
Bioinformatics; 2006 Jun; 22(11):1302-7. PubMed ID: 16527830
[TBL] [Abstract][Full Text] [Related]
20. FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.
Lam KK; LaButti K; Khalak A; Tse D
Bioinformatics; 2015 Oct; 31(19):3207-9. PubMed ID: 26040454
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
