189 related articles for article (PubMed ID: 33289895)
1. Alignment of Biological Sequences with Jalview.
Procter JB; Carstairs GM; Soares B; Mourão K; Ofoegbu TC; Barton D; Lui L; Menard A; Sherstnev N; Roldan-Martinez D; Duce S; Martin DMA; Barton GJ
Methods Mol Biol; 2021; 2231():203-224. PubMed ID: 33289895
[TBL] [Abstract][Full Text] [Related]
2. Jalview Version 2--a multiple sequence alignment editor and analysis workbench.
Waterhouse AM; Procter JB; Martin DM; Clamp M; Barton GJ
Bioinformatics; 2009 May; 25(9):1189-91. PubMed ID: 19151095
[TBL] [Abstract][Full Text] [Related]
3. Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments.
Poirot O; O'Toole E; Notredame C
Nucleic Acids Res; 2003 Jul; 31(13):3503-6. PubMed ID: 12824354
[TBL] [Abstract][Full Text] [Related]
4. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.
Abascal F; Zardoya R; Telford MJ
Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W7-13. PubMed ID: 20435676
[TBL] [Abstract][Full Text] [Related]
5. The Jalview Java alignment editor.
Clamp M; Cuff J; Searle SM; Barton GJ
Bioinformatics; 2004 Feb; 20(3):426-7. PubMed ID: 14960472
[TBL] [Abstract][Full Text] [Related]
6. Evolutionary Sequence Analysis and Visualization with Wasabi.
Veidenberg A; Löytynoja A
Methods Mol Biol; 2021; 2231():225-240. PubMed ID: 33289896
[TBL] [Abstract][Full Text] [Related]
7. webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser.
Löytynoja A; Goldman N
BMC Bioinformatics; 2010 Nov; 11():579. PubMed ID: 21110866
[TBL] [Abstract][Full Text] [Related]
8. PicXAA-Web: a web-based platform for non-progressive maximum expected accuracy alignment of multiple biological sequences.
Sahraeian SM; Yoon BJ
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W8-12. PubMed ID: 21515632
[TBL] [Abstract][Full Text] [Related]
9. Revisiting Evaluation of Multiple Sequence Alignment Methods.
Warnow T
Methods Mol Biol; 2021; 2231():299-317. PubMed ID: 33289899
[TBL] [Abstract][Full Text] [Related]
10. PROMALS web server for accurate multiple protein sequence alignments.
Pei J; Kim BH; Tang M; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
[TBL] [Abstract][Full Text] [Related]
11. Visualization of near-optimal sequence alignments.
Smoot ME; Guerlain SA; Pearson WR
Bioinformatics; 2004 Apr; 20(6):953-8. PubMed ID: 14751975
[TBL] [Abstract][Full Text] [Related]
12. DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method.
Balech B; Monaco A; Perniola M; Santamaria M; Donvito G; Vicario S; Maggi G; Pesole G
Methods Mol Biol; 2018; 1746():173-180. PubMed ID: 29492894
[TBL] [Abstract][Full Text] [Related]
13. RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.
Wernersson R; Pedersen AG
Nucleic Acids Res; 2003 Jul; 31(13):3537-9. PubMed ID: 12824361
[TBL] [Abstract][Full Text] [Related]
14. APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.
O'Sullivan O; Zehnder M; Higgins D; Bucher P; Grosdidier A; Notredame C
Bioinformatics; 2003; 19 Suppl 1():i215-21. PubMed ID: 12855461
[TBL] [Abstract][Full Text] [Related]
15. GenAlyzer: interactive visualization of sequence similarities between entire genomes.
Choudhuri JV; Schleiermacher C; Kurtz S; Giegerich R
Bioinformatics; 2004 Aug; 20(12):1964-5. PubMed ID: 14988113
[TBL] [Abstract][Full Text] [Related]
16. Protein sequence alignment analysis by local covariation: coevolution statistics detect benchmark alignment errors.
Dickson RJ; Gloor GB
PLoS One; 2012; 7(6):e37645. PubMed ID: 22715369
[TBL] [Abstract][Full Text] [Related]
17. MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.
Thompson JD; Holbrook SR; Katoh K; Koehl P; Moras D; Westhof E; Poch O
Nucleic Acids Res; 2005; 33(13):4164-71. PubMed ID: 16043635
[TBL] [Abstract][Full Text] [Related]
18. Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA.
Troshin PV; Procter JB; Barton GJ
Bioinformatics; 2011 Jul; 27(14):2001-2. PubMed ID: 21593132
[TBL] [Abstract][Full Text] [Related]
19. MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Edgar RC
Nucleic Acids Res; 2004; 32(5):1792-7. PubMed ID: 15034147
[TBL] [Abstract][Full Text] [Related]
20. SQUARE--determining reliable regions in sequence alignments.
Tress ML; Graña O; Valencia A
Bioinformatics; 2004 Apr; 20(6):974-5. PubMed ID: 14764569
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
