141 related articles for article (PubMed ID: 33329699)
1. A Comparison of Low Read Depth QuantSeq 3' Sequencing to Total RNA-Seq in FUS Mutant Mice.
Jarvis S; Birsa N; Secrier M; Fratta P; Plagnol V
Front Genet; 2020; 11():562445. PubMed ID: 33329699
[TBL] [Abstract][Full Text] [Related]
2. A comparison between whole transcript and 3' RNA sequencing methods using Kapa and Lexogen library preparation methods.
Ma F; Fuqua BK; Hasin Y; Yukhtman C; Vulpe CD; Lusis AJ; Pellegrini M
BMC Genomics; 2019 Jan; 20(1):9. PubMed ID: 30616562
[TBL] [Abstract][Full Text] [Related]
3. QuantSeq. 3' Sequencing combined with Salmon provides a fast, reliable approach for high throughput RNA expression analysis.
Corley SM; Troy NM; Bosco A; Wilkins MR
Sci Rep; 2019 Dec; 9(1):18895. PubMed ID: 31827207
[TBL] [Abstract][Full Text] [Related]
4. Influence of RNA-Seq library construction, sampling methods, and tissue harvesting time on gene expression estimation.
Chiari Y; Howard L; Moreno N; Relyea S; Dunnigan J; Boyer MC; Kardos M; Glaberman S; Luikart G
Mol Ecol Resour; 2023 May; 23(4):803-817. PubMed ID: 36704853
[TBL] [Abstract][Full Text] [Related]
5. The effects of a globin blocker on the resolution of 3'mRNA sequencing data in porcine blood.
Lim KS; Dong Q; Moll P; Vitkovska J; Wiktorin G; Bannister S; Daujotyte D; Tuggle CK; Lunney JK; Plastow GS; Dekkers JCM
BMC Genomics; 2019 Oct; 20(1):741. PubMed ID: 31615396
[TBL] [Abstract][Full Text] [Related]
6. Differentially expressed genes from RNA-Seq and functional enrichment results are affected by the choice of single-end versus paired-end reads and stranded versus non-stranded protocols.
Corley SM; MacKenzie KL; Beverdam A; Roddam LF; Wilkins MR
BMC Genomics; 2017 May; 18(1):399. PubMed ID: 28535780
[TBL] [Abstract][Full Text] [Related]
7. A fuzzy method for RNA-Seq differential expression analysis in presence of multireads.
Consiglio A; Mencar C; Grillo G; Marzano F; Caratozzolo MF; Liuni S
BMC Bioinformatics; 2016 Nov; 17(Suppl 12):345. PubMed ID: 28185579
[TBL] [Abstract][Full Text] [Related]
8. Amyotrophic Lateral Sclerosis associated FUS mutation shortens mitochondria and induces neurotoxicity.
Nakaya T; Maragkakis M
Sci Rep; 2018 Oct; 8(1):15575. PubMed ID: 30349096
[TBL] [Abstract][Full Text] [Related]
9. RNA sequencing profiling of the retina in C57BL/6J and DBA/2J mice: Enhancing the retinal microarray data sets from GeneNetwork.
Wang J; Geisert EE; Struebing FL
Mol Vis; 2019; 25():345-358. PubMed ID: 31354228
[TBL] [Abstract][Full Text] [Related]
10. FUS(1-359) transgenic mice as a model of ALS: pathophysiological and molecular aspects of the proteinopathy.
Funikov SY; Rezvykh AP; Mazin PV; Morozov AV; Maltsev AV; Chicheva MM; Vikhareva EA; Evgen'ev MB; Ustyugov AA
Neurogenetics; 2018 Aug; 19(3):189-204. PubMed ID: 29982879
[TBL] [Abstract][Full Text] [Related]
11. FUS-mediated regulation of alternative RNA processing in neurons: insights from global transcriptome analysis.
Masuda A; Takeda J; Ohno K
Wiley Interdiscip Rev RNA; 2016 May; 7(3):330-40. PubMed ID: 26822113
[TBL] [Abstract][Full Text] [Related]
12. Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases.
Wu P; Zuo X; Deng H; Liu X; Liu L; Ji A
Brain Res Bull; 2013 Aug; 97():69-80. PubMed ID: 23756188
[TBL] [Abstract][Full Text] [Related]
13. Cost effective, experimentally robust differential-expression analysis for human/mammalian, pathogen and dual-species transcriptomics.
Shetty AC; Mattick J; Chung M; McCracken C; Mahurkar A; Filler SG; Fraser CM; Rasko DA; Bruno VM; Dunning Hotopp JC
Microb Genom; 2020 Jan; 6(1):. PubMed ID: 31851607
[TBL] [Abstract][Full Text] [Related]
14. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
[TBL] [Abstract][Full Text] [Related]
15. Aberrant axon branching via Fos-B dysregulation in FUS-ALS motor neurons.
Akiyama T; Suzuki N; Ishikawa M; Fujimori K; Sone T; Kawada J; Funayama R; Fujishima F; Mitsuzawa S; Ikeda K; Ono H; Shijo T; Osana S; Shirota M; Nakagawa T; Kitajima Y; Nishiyama A; Izumi R; Morimoto S; Okada Y; Kamei T; Nishida M; Nogami M; Kaneda S; Ikeuchi Y; Mitsuhashi H; Nakayama K; Fujii T; Warita H; Okano H; Aoki M
EBioMedicine; 2019 Jul; 45():362-378. PubMed ID: 31262712
[TBL] [Abstract][Full Text] [Related]
16. RNA-seq analyses reveal that cervical spinal cords and anterior motor neurons from amyotrophic lateral sclerosis subjects show reduced expression of mitochondrial DNA-encoded respiratory genes, and rhTFAM may correct this respiratory deficiency.
Ladd AC; Brohawn DG; Thomas RR; Keeney PM; Berr SS; Khan SM; Portell FR; Shakenov MZ; Antkowiak PF; Kundu B; Tustison N; Bennett JP
Brain Res; 2017 Jul; 1667():74-83. PubMed ID: 28511992
[TBL] [Abstract][Full Text] [Related]
17. Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific expression.
Raghupathy N; Choi K; Vincent MJ; Beane GL; Sheppard KS; Munger SC; Korstanje R; Pardo-Manual de Villena F; Churchill GA
Bioinformatics; 2018 Jul; 34(13):2177-2184. PubMed ID: 29444201
[TBL] [Abstract][Full Text] [Related]
18. Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data.
Li P; Piao Y; Shon HS; Ryu KH
BMC Bioinformatics; 2015 Oct; 16():347. PubMed ID: 26511205
[TBL] [Abstract][Full Text] [Related]
19. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
[TBL] [Abstract][Full Text] [Related]
20. Comparative transcriptome analysis of epithelial and fiber cells in newborn mouse lenses with RNA sequencing.
Hoang TV; Kumar PK; Sutharzan S; Tsonis PA; Liang C; Robinson ML
Mol Vis; 2014; 20():1491-517. PubMed ID: 25489224
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
