138 related articles for article (PubMed ID: 33347435)
1. Confidence intervals by constrained optimization-An algorithm and software package for practical identifiability analysis in systems biology.
Borisov I; Metelkin E
PLoS Comput Biol; 2020 Dec; 16(12):e1008495. PubMed ID: 33347435
[TBL] [Abstract][Full Text] [Related]
2. An easy and efficient approach for testing identifiability.
Kreutz C
Bioinformatics; 2018 Jun; 34(11):1913-1921. PubMed ID: 29365095
[TBL] [Abstract][Full Text] [Related]
3. Calculating all multiple parameter solutions of ODE models to avoid biological misinterpretations.
Saccomani MP; Thomaseth K
Math Biosci Eng; 2019 Jul; 16(6):6438-6453. PubMed ID: 31698571
[TBL] [Abstract][Full Text] [Related]
4. GpABC: a Julia package for approximate Bayesian computation with Gaussian process emulation.
Tankhilevich E; Ish-Horowicz J; Hameed T; Roesch E; Kleijn I; Stumpf MPH; He F
Bioinformatics; 2020 May; 36(10):3286-3287. PubMed ID: 32022854
[TBL] [Abstract][Full Text] [Related]
5. DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia.
Fu X; Zhou X; Gu D; Cao Z; Grima R
Bioinformatics; 2022 Sep; 38(17):4243-4245. PubMed ID: 35799359
[TBL] [Abstract][Full Text] [Related]
6. Optimality and identification of dynamic models in systems biology: an inverse optimal control framework.
Tsiantis N; Balsa-Canto E; Banga JR
Bioinformatics; 2018 Jul; 34(14):2433-2440. PubMed ID: 29522196
[TBL] [Abstract][Full Text] [Related]
7. Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems.
Gábor A; Villaverde AF; Banga JR
BMC Syst Biol; 2017 May; 11(1):54. PubMed ID: 28476119
[TBL] [Abstract][Full Text] [Related]
8. A confidence building exercise in data and identifiability: Modeling cancer chemotherapy as a case study.
Eisenberg MC; Jain HV
J Theor Biol; 2017 Oct; 431():63-78. PubMed ID: 28733187
[TBL] [Abstract][Full Text] [Related]
9. GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models.
Ligon TS; Fröhlich F; Chis OT; Banga JR; Balsa-Canto E; Hasenauer J
Bioinformatics; 2018 Apr; 34(8):1421-1423. PubMed ID: 29206901
[TBL] [Abstract][Full Text] [Related]
10. SBMLToolkit.jl: a Julia package for importing SBML into the SciML ecosystem.
Lang PF; Jain A; Rackauckas C
J Integr Bioinform; 2024 May; ():. PubMed ID: 38801698
[TBL] [Abstract][Full Text] [Related]
11. BioSimulator.jl: Stochastic simulation in Julia.
Landeros A; Stutz T; Keys KL; Alekseyenko A; Sinsheimer JS; Lange K; Sehl ME
Comput Methods Programs Biomed; 2018 Dec; 167():23-35. PubMed ID: 30501857
[TBL] [Abstract][Full Text] [Related]
12. HyperGraphs.jl: representing higher-order relationships in Julia.
Diaz LPM; Stumpf MPH
Bioinformatics; 2022 Jul; 38(14):3660-3661. PubMed ID: 35674360
[TBL] [Abstract][Full Text] [Related]
13. Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood.
Raue A; Kreutz C; Maiwald T; Bachmann J; Schilling M; Klingmüller U; Timmer J
Bioinformatics; 2009 Aug; 25(15):1923-9. PubMed ID: 19505944
[TBL] [Abstract][Full Text] [Related]
14. Profile-Wise Analysis: A profile likelihood-based workflow for identifiability analysis, estimation, and prediction with mechanistic mathematical models.
Simpson MJ; Maclaren OJ
PLoS Comput Biol; 2023 Sep; 19(9):e1011515. PubMed ID: 37773942
[TBL] [Abstract][Full Text] [Related]
15. MLAGO: machine learning-aided global optimization for Michaelis constant estimation of kinetic modeling.
Maeda K; Hatae A; Sakai Y; Boogerd FC; Kurata H
BMC Bioinformatics; 2022 Nov; 23(1):455. PubMed ID: 36319952
[TBL] [Abstract][Full Text] [Related]
16. SensSB: a software toolbox for the development and sensitivity analysis of systems biology models.
Rodriguez-Fernandez M; Banga JR
Bioinformatics; 2010 Jul; 26(13):1675-6. PubMed ID: 20444837
[TBL] [Abstract][Full Text] [Related]
17. Saddle-Reset for Robust Parameter Estimation and Identifiability Analysis of Nonlinear Mixed Effects Models.
Bjugård Nyberg H; Hooker AC; Bauer RJ; Aoki Y
AAPS J; 2020 Jul; 22(4):90. PubMed ID: 32617704
[TBL] [Abstract][Full Text] [Related]
18. A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification.
Guo WF; Zhang SW; Shi QQ; Zhang CM; Zeng T; Chen L
BMC Genomics; 2018 Jan; 19(Suppl 1):924. PubMed ID: 29363426
[TBL] [Abstract][Full Text] [Related]
19. Structural Identifiability of Dynamic Systems Biology Models.
Villaverde AF; Barreiro A; Papachristodoulou A
PLoS Comput Biol; 2016 Oct; 12(10):e1005153. PubMed ID: 27792726
[TBL] [Abstract][Full Text] [Related]
20. pyABC: distributed, likelihood-free inference.
Klinger E; Rickert D; Hasenauer J
Bioinformatics; 2018 Oct; 34(20):3591-3593. PubMed ID: 29762723
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
