BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

205 related articles for article (PubMed ID: 33371889)

  • 1. Genome-wide detection of short tandem repeat expansions by long-read sequencing.
    Liu Q; Tong Y; Wang K
    BMC Bioinformatics; 2020 Dec; 21(Suppl 21):542. PubMed ID: 33371889
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions.
    Rajan-Babu IS; Peng JJ; Chiu R; ; ; Li C; Mohajeri A; Dolzhenko E; Eberle MA; Birol I; Friedman JM
    Genome Med; 2021 Aug; 13(1):126. PubMed ID: 34372915
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing.
    Doi K; Monjo T; Hoang PH; Yoshimura J; Yurino H; Mitsui J; Ishiura H; Takahashi Y; Ichikawa Y; Goto J; Tsuji S; Morishita S
    Bioinformatics; 2014 Mar; 30(6):815-22. PubMed ID: 24215022
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.
    Fungtammasan A; Ananda G; Hile SE; Su MS; Sun C; Harris R; Medvedev P; Eckert K; Makova KD
    Genome Res; 2015 May; 25(5):736-49. PubMed ID: 25823460
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Cost-Effective Cas9-Mediated Targeted Sequencing of Spinocerebellar Ataxia Repeat Expansions.
    Tachikawa K; Shimizu T; Imai T; Ko R; Kawai Y; Omae Y; Tokunaga K; Frith MC; Yamano Y; Mitsuhashi S
    J Mol Diagn; 2024 Feb; 26(2):85-95. PubMed ID: 38008286
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Interrogating the "unsequenceable" genomic trinucleotide repeat disorders by long-read sequencing.
    Liu Q; Zhang P; Wang D; Gu W; Wang K
    Genome Med; 2017 Jul; 9(1):65. PubMed ID: 28720120
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Recent advances in the detection of repeat expansions with short-read next-generation sequencing.
    Bahlo M; Bennett MF; Degorski P; Tankard RM; Delatycki MB; Lockhart PJ
    F1000Res; 2018; 7():. PubMed ID: 29946432
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Detecting Expansions of Tandem Repeats in Cohorts Sequenced with Short-Read Sequencing Data.
    Tankard RM; Bennett MF; Degorski P; Delatycki MB; Lockhart PJ; Bahlo M
    Am J Hum Genet; 2018 Dec; 103(6):858-873. PubMed ID: 30503517
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Linked-read sequencing for detecting short tandem repeat expansions.
    Chiu R; Rajan-Babu IS; Birol I; Friedman JM
    Sci Rep; 2022 Jun; 12(1):9352. PubMed ID: 35672336
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rapid Diagnosis of Spinocerebellar Ataxia 36 in a Three-Generation Family Using Short-Read Whole-Genome Sequencing Data.
    Rafehi H; Szmulewicz DJ; Pope K; Wallis M; Christodoulou J; White SM; Delatycki MB; Lockhart PJ; Bahlo M
    Mov Disord; 2020 Sep; 35(9):1675-1679. PubMed ID: 32407596
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molecular genetics of hereditary spinocerebellar ataxia: mutation analysis of spinocerebellar ataxia genes and CAG/CTG repeat expansion detection in 225 Italian families.
    Brusco A; Gellera C; Cagnoli C; Saluto A; Castucci A; Michielotto C; Fetoni V; Mariotti C; Migone N; Di Donato S; Taroni F
    Arch Neurol; 2004 May; 61(5):727-33. PubMed ID: 15148151
    [TBL] [Abstract][Full Text] [Related]  

  • 12. STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci.
    Dashnow H; Pedersen BS; Hiatt L; Brown J; Beecroft SJ; Ravenscroft G; LaCroix AJ; Lamont P; Roxburgh RH; Rodrigues MJ; Davis M; Mefford HC; Laing NG; Quinlan AR
    Genome Biol; 2022 Dec; 23(1):257. PubMed ID: 36517892
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes.
    Tang H; Kirkness EF; Lippert C; Biggs WH; Fabani M; Guzman E; Ramakrishnan S; Lavrenko V; Kakaradov B; Hou C; Hicks B; Heckerman D; Och FJ; Caskey CT; Venter JC; Telenti A
    Am J Hum Genet; 2017 Nov; 101(5):700-715. PubMed ID: 29100084
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Detection of repeat expansions in large next generation DNA and RNA sequencing data without alignment.
    Fearnley LG; Bennett MF; Bahlo M
    Sci Rep; 2022 Jul; 12(1):13124. PubMed ID: 35907931
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Detection and discovery of repeat expansions in ataxia enabled by next-generation sequencing: present and future.
    Rafehi H; Bennett MF; Bahlo M
    Emerg Top Life Sci; 2023 Dec; 7(3):349-359. PubMed ID: 37733280
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Profiling the Genome-Wide Landscape of Short Tandem Repeats by Long-Read Sequencing.
    Liu Z; Zhao G; Xiao Y; Zeng S; Yuan Y; Zhou X; Fang Z; He R; Li B; Zhao Y; Pan H; Wang Y; Yu G; Peng IF; Wang D; Meng Q; Xu Q; Sun Q; Yan X; Shen L; Jiang H; Xia K; Wang J; Guo J; Liang F; Li J; Tang B
    Front Genet; 2022; 13():810595. PubMed ID: 35601492
    [No Abstract]   [Full Text] [Related]  

  • 17. STRetch: detecting and discovering pathogenic short tandem repeat expansions.
    Dashnow H; Lek M; Phipson B; Halman A; Sadedin S; Lonsdale A; Davis M; Lamont P; Clayton JS; Laing NG; MacArthur DG; Oshlack A
    Genome Biol; 2018 Aug; 19(1):121. PubMed ID: 30129428
    [TBL] [Abstract][Full Text] [Related]  

  • 18. STRAS:a snakemake pipeline for genome-wide short tandem repeats annotation and score.
    Zhang M
    Hum Genet; 2024 Jun; 143(6):735-738. PubMed ID: 38507015
    [TBL] [Abstract][Full Text] [Related]  

  • 19. WebSTR: A Population-wide Database of Short Tandem Repeat Variation in Humans.
    Lundström OS; Adriaan Verbiest M; Xia F; Jam HZ; Zlobec I; Anisimova M; Gymrek M
    J Mol Biol; 2023 Oct; 435(20):168260. PubMed ID: 37678708
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Selection pressure on human STR loci and its relevance in repeat expansion disease.
    Shimada MK; Sanbonmatsu R; Yamaguchi-Kabata Y; Yamasaki C; Suzuki Y; Chakraborty R; Gojobori T; Imanishi T
    Mol Genet Genomics; 2016 Oct; 291(5):1851-69. PubMed ID: 27290643
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.