275 related articles for article (PubMed ID: 33396183)
1. SYN-View: A Phylogeny-Based Synteny Exploration Tool for the Identification of Gene Clusters Linked to Antibiotic Resistance.
Stahlecker J; Mingyar E; Ziemert N; Mungan MD
Molecules; 2020 Dec; 26(1):. PubMed ID: 33396183
[TBL] [Abstract][Full Text] [Related]
2. The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery.
Alanjary M; Kronmiller B; Adamek M; Blin K; Weber T; Huson D; Philmus B; Ziemert N
Nucleic Acids Res; 2017 Jul; 45(W1):W42-W48. PubMed ID: 28472505
[TBL] [Abstract][Full Text] [Related]
3. ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining.
Mungan MD; Alanjary M; Blin K; Weber T; Medema MH; Ziemert N
Nucleic Acids Res; 2020 Jul; 48(W1):W546-W552. PubMed ID: 32427317
[TBL] [Abstract][Full Text] [Related]
4. ARTS-DB: a database for antibiotic resistant targets.
Mungan MD; Blin K; Ziemert N
Nucleic Acids Res; 2022 Jan; 50(D1):D736-D740. PubMed ID: 34718689
[TBL] [Abstract][Full Text] [Related]
5. FunARTS, the Fungal bioActive compound Resistant Target Seeker, an exploration engine for target-directed genome mining in fungi.
Yılmaz TM; Mungan MD; Berasategui A; Ziemert N
Nucleic Acids Res; 2023 Jul; 51(W1):W191-W197. PubMed ID: 37207330
[TBL] [Abstract][Full Text] [Related]
6. Identification of Thiotetronic Acid Antibiotic Biosynthetic Pathways by Target-directed Genome Mining.
Tang X; Li J; Millán-Aguiñaga N; Zhang JJ; O'Neill EC; Ugalde JA; Jensen PR; Mantovani SM; Moore BS
ACS Chem Biol; 2015 Dec; 10(12):2841-2849. PubMed ID: 26458099
[TBL] [Abstract][Full Text] [Related]
7. Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters.
Blin K; Kim HU; Medema MH; Weber T
Brief Bioinform; 2019 Jul; 20(4):1103-1113. PubMed ID: 29112695
[TBL] [Abstract][Full Text] [Related]
8. Mining biosynthetic gene clusters in Paenibacillus genomes to discover novel antibiotics.
Kim MS; Jeong DE; Jang JP; Jang JH; Choi SK
BMC Microbiol; 2024 Jun; 24(1):226. PubMed ID: 38937695
[TBL] [Abstract][Full Text] [Related]
9. Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products.
Li YF; Tsai KJS; Harvey CJB; Li JJ; Ary BE; Berlew EE; Boehman BL; Findley DM; Friant AG; Gardner CA; Gould MP; Ha JH; Lilley BK; McKinstry EL; Nawal S; Parry RC; Rothchild KW; Silbert SD; Tentilucci MD; Thurston AM; Wai RB; Yoon Y; Aiyar RS; Medema MH; Hillenmeyer ME; Charkoudian LK
Fungal Genet Biol; 2016 Apr; 89():18-28. PubMed ID: 26808821
[TBL] [Abstract][Full Text] [Related]
10. The ADEP Biosynthetic Gene Cluster in Streptomyces hawaiiensis NRRL 15010 Reveals an Accessory
Thomy D; Culp E; Adamek M; Cheng EY; Ziemert N; Wright GD; Sass P; Brötz-Oesterhelt H
Appl Environ Microbiol; 2019 Oct; 85(20):. PubMed ID: 31399403
[TBL] [Abstract][Full Text] [Related]
11. In silico tools for the analysis of antibiotic biosynthetic pathways.
Weber T
Int J Med Microbiol; 2014 May; 304(3-4):230-5. PubMed ID: 24631213
[TBL] [Abstract][Full Text] [Related]
12. Secondary Metabolite Transcriptomic Pipeline (SeMa-Trap), an expression-based exploration tool for increased secondary metabolite production in bacteria.
Mungan MD; Harbig TA; Perez NH; Edenhart S; Stegmann E; Nieselt K; Ziemert N
Nucleic Acids Res; 2022 Jul; 50(W1):W682-W689. PubMed ID: 35580059
[TBL] [Abstract][Full Text] [Related]
13. Genome mining of biosynthetic and chemotherapeutic gene clusters in Streptomyces bacteria.
Belknap KC; Park CJ; Barth BM; Andam CP
Sci Rep; 2020 Feb; 10(1):2003. PubMed ID: 32029878
[TBL] [Abstract][Full Text] [Related]
14. FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution.
Vignolle GA; Schaffer D; Zehetner L; Mach RL; Mach-Aigner AR; Derntl C
PLoS Comput Biol; 2021 Sep; 17(9):e1009372. PubMed ID: 34570757
[TBL] [Abstract][Full Text] [Related]
15. Genome mining reveals novel biosynthetic gene clusters in entomopathogenic bacteria.
Meesil W; Muangpat P; Sitthisak S; Rattanarojpong T; Chantratita N; Machado RAR; Shi YM; Bode HB; Vitta A; Thanwisai A
Sci Rep; 2023 Nov; 13(1):20764. PubMed ID: 38007490
[TBL] [Abstract][Full Text] [Related]
16. Targeted antibiotic discovery through biosynthesis-associated resistance determinants: target directed genome mining.
O'Neill EC; Schorn M; Larson CB; Millán-Aguiñaga N
Crit Rev Microbiol; 2019 May; 45(3):255-277. PubMed ID: 30985219
[TBL] [Abstract][Full Text] [Related]
17. Discovery of fungal onoceroid triterpenoids through domainless enzyme-targeted global genome mining.
Tang J; Matsuda Y
Nat Commun; 2024 May; 15(1):4312. PubMed ID: 38773118
[TBL] [Abstract][Full Text] [Related]
18. A deep learning genome-mining strategy for biosynthetic gene cluster prediction.
Hannigan GD; Prihoda D; Palicka A; Soukup J; Klempir O; Rampula L; Durcak J; Wurst M; Kotowski J; Chang D; Wang R; Piizzi G; Temesi G; Hazuda DJ; Woelk CH; Bitton DA
Nucleic Acids Res; 2019 Oct; 47(18):e110. PubMed ID: 31400112
[TBL] [Abstract][Full Text] [Related]
19. A Single Biosynthetic Gene Cluster Is Responsible for the Production of Bagremycin Antibiotics and Ferroverdin Iron Chelators.
Martinet L; Naômé A; Deflandre B; Maciejewska M; Tellatin D; Tenconi E; Smargiasso N; de Pauw E; van Wezel GP; Rigali S
mBio; 2019 Aug; 10(4):. PubMed ID: 31409675
[TBL] [Abstract][Full Text] [Related]
20. Phylogenomic Analysis of Natural Products Biosynthetic Gene Clusters Allows Discovery of Arseno-Organic Metabolites in Model Streptomycetes.
Cruz-Morales P; Kopp JF; Martínez-Guerrero C; Yáñez-Guerra LA; Selem-Mojica N; Ramos-Aboites H; Feldmann J; Barona-Gómez F
Genome Biol Evol; 2016 Jul; 8(6):1906-16. PubMed ID: 27289100
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]