These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
73 related articles for article (PubMed ID: 33398265)
1. LazySampling and LinearSampling: Fast Stochastic Sampling of RNA Secondary Structure with Applications to SARS-CoV-2. Zhang H; Zhang L; Li S; Mathews DH; Huang L bioRxiv; 2021 Nov; ():. PubMed ID: 33398265 [TBL] [Abstract][Full Text] [Related]
2. LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2. Zhang H; Li S; Zhang L; Mathews DH; Huang L Nucleic Acids Res; 2023 Jan; 51(2):e7. PubMed ID: 36401871 [TBL] [Abstract][Full Text] [Related]
3. LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities. Zhang H; Zhang L; Mathews DH; Huang L Bioinformatics; 2020 Jul; 36(Suppl_1):i258-i267. PubMed ID: 32657379 [TBL] [Abstract][Full Text] [Related]
4. LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments. Malik A; Zhang L; Gautam M; Dai N; Li S; Zhang H; Mathews DH; Huang L ArXiv; 2024 Jul; ():. PubMed ID: 35795813 [TBL] [Abstract][Full Text] [Related]
5. LinearTurboFold: Linear-Time Global Prediction of Conserved Structures for RNA Homologs with Applications to SARS-CoV-2. Li S; Zhang H; Zhang L; Liu K; Liu B; Mathews DH; Huang L bioRxiv; 2021 Nov; ():. PubMed ID: 34816262 [TBL] [Abstract][Full Text] [Related]
6. LinearAlifold: Linear-time consensus structure prediction for RNA alignments. Malik A; Zhang L; Gautam M; Dai N; Li S; Zhang H; Mathews DH; Huang L J Mol Biol; 2024 Sep; 436(17):168694. PubMed ID: 38971557 [TBL] [Abstract][Full Text] [Related]
7. A Unified Dynamic Programming Framework for the Analysis of Interacting Nucleic Acid Strands: Enhanced Models, Scalability, and Speed. Fornace ME; Porubsky NJ; Pierce NA ACS Synth Biol; 2020 Oct; 9(10):2665-2678. PubMed ID: 32910644 [TBL] [Abstract][Full Text] [Related]
8. A statistical sampling algorithm for RNA secondary structure prediction. Ding Y; Lawrence CE Nucleic Acids Res; 2003 Dec; 31(24):7280-301. PubMed ID: 14654704 [TBL] [Abstract][Full Text] [Related]
9. LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search. Huang L; Zhang H; Deng D; Zhao K; Liu K; Hendrix DA; Mathews DH Bioinformatics; 2019 Jul; 35(14):i295-i304. PubMed ID: 31510672 [TBL] [Abstract][Full Text] [Related]
10. Evaluation of a sophisticated SCFG design for RNA secondary structure prediction. Nebel ME; Scheid A Theory Biosci; 2011 Dec; 130(4):313-36. PubMed ID: 22135038 [TBL] [Abstract][Full Text] [Related]
11. Effectiveness and cost-effectiveness of four different strategies for SARS-CoV-2 surveillance in the general population (CoV-Surv Study): a structured summary of a study protocol for a cluster-randomised, two-factorial controlled trial. Deckert A; Anders S; de Allegri M; Nguyen HT; Souares A; McMahon S; Boerner K; Meurer M; Herbst K; Sand M; Koeppel L; Siems T; Brugnara L; Brenner S; Burk R; Lou D; Kirrmaier D; Duan Y; Ovchinnikova S; Marx M; Kräusslich HG; Knop M; Bärnighausen T; Denkinger C Trials; 2021 Jan; 22(1):39. PubMed ID: 33419461 [TBL] [Abstract][Full Text] [Related]
12. An efficient algorithm for upper bound on the partition function of nucleic acids. Chitsaz H; Forouzmand E; Haffari G J Comput Biol; 2013 Jul; 20(7):486-94. PubMed ID: 23829650 [TBL] [Abstract][Full Text] [Related]
13. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment. Xu X; Ji Y; Stormo GD Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756 [TBL] [Abstract][Full Text] [Related]
14. Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model. Waldispühl J; Clote P J Comput Biol; 2007 Mar; 14(2):190-215. PubMed ID: 17456015 [TBL] [Abstract][Full Text] [Related]
15. An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressure. Waldispühl J; Ponty Y J Comput Biol; 2011 Nov; 18(11):1465-79. PubMed ID: 22035326 [TBL] [Abstract][Full Text] [Related]
16. A Boltzmann Sampler for 1-Pairs with Double Filtration. Barrett C; He Q; Huang FW; Reidys CM J Comput Biol; 2019 Mar; 26(3):173-192. PubMed ID: 30653353 [TBL] [Abstract][Full Text] [Related]
17. A randomized, double-blind, placebo-controlled phase III clinical trial to evaluate the efficacy and safety of SARS-CoV-2 vaccine (inactivated, Vero cell): a structured summary of a study protocol for a randomised controlled trial. Akova M; Unal S Trials; 2021 Apr; 22(1):276. PubMed ID: 33849629 [TBL] [Abstract][Full Text] [Related]
18. Thermodynamics of RNA structures by Wang-Landau sampling. Lou F; Clote P Bioinformatics; 2010 Jun; 26(12):i278-86. PubMed ID: 20529917 [TBL] [Abstract][Full Text] [Related]
19. Efficient algorithms for probing the RNA mutation landscape. Waldispühl J; Devadas S; Berger B; Clote P PLoS Comput Biol; 2008 Aug; 4(8):e1000124. PubMed ID: 18688270 [TBL] [Abstract][Full Text] [Related]
20. Random generation of RNA secondary structures according to native distributions. Nebel ME; Scheid A; Weinberg F Algorithms Mol Biol; 2011 Oct; 6():24. PubMed ID: 21992500 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]