121 related articles for article (PubMed ID: 33400654)
21. Improved protein structure selection using decoy-dependent discriminatory functions.
Wang K; Fain B; Levitt M; Samudrala R
BMC Struct Biol; 2004 Jun; 4():8. PubMed ID: 15207004
[TBL] [Abstract][Full Text] [Related]
22. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
Zhang Y; Kolinski A; Skolnick J
Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
[TBL] [Abstract][Full Text] [Related]
23. Using physical features of protein core packing to distinguish real proteins from decoys.
Grigas AT; Mei Z; Treado JD; Levine ZA; Regan L; O'Hern CS
Protein Sci; 2020 Sep; 29(9):1931-1944. PubMed ID: 32710566
[TBL] [Abstract][Full Text] [Related]
24. Building maps of protein structure spaces in template-free protein structure prediction.
Zaman AB; Shehu A
J Bioinform Comput Biol; 2019 Dec; 17(6):1940013. PubMed ID: 32019408
[TBL] [Abstract][Full Text] [Related]
25. Template-free protein structure prediction and quality assessment with an all-atom free-energy model.
Gopal SM; Klenin K; Wenzel W
Proteins; 2009 Nov; 77(2):330-41. PubMed ID: 19422063
[TBL] [Abstract][Full Text] [Related]
26. Refining near-native protein-protein docking decoys by local resampling and energy minimization.
Liang S; Wang G; Zhou Y
Proteins; 2009 Aug; 76(2):309-16. PubMed ID: 19156819
[TBL] [Abstract][Full Text] [Related]
27. A new pairwise folding potential based on improved decoy generation and side-chain packing.
Loose C; Klepeis JL; Floudas CA
Proteins; 2004 Feb; 54(2):303-14. PubMed ID: 14696192
[TBL] [Abstract][Full Text] [Related]
28. Clustering 100,000 protein structure decoys in minutes.
Li SC; Bu D; Li M
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(3):765-73. PubMed ID: 22025764
[TBL] [Abstract][Full Text] [Related]
29. Selecting Near-Native Protein Structures from Predicted Decoy Sets Using Ordered Graphlet Degree Similarity.
Han X; Li L; Lu Y
Genes (Basel); 2019 Feb; 10(2):. PubMed ID: 30754721
[TBL] [Abstract][Full Text] [Related]
30. Identification of near-native structures by clustering protein docking conformations.
Lorenzen S; Zhang Y
Proteins; 2007 Jul; 68(1):187-94. PubMed ID: 17397057
[TBL] [Abstract][Full Text] [Related]
31. A novel approach to decoy set generation: designing a physical energy function having local minima with native structure characteristics.
Keasar C; Levitt M
J Mol Biol; 2003 May; 329(1):159-74. PubMed ID: 12742025
[TBL] [Abstract][Full Text] [Related]
32. A beta-complex statistical four body contact potential combined with a hydrogen bond statistical potential recognizes the correct native structure from protein decoy sets.
Sánchez-González G; Kim JK; Kim DS; Garduño-Juárez R
Proteins; 2013 Aug; 81(8):1420-33. PubMed ID: 23568277
[TBL] [Abstract][Full Text] [Related]
33. Probabilistic search and energy guidance for biased decoy sampling in ab initio protein structure prediction.
Molloy K; Saleh S; Shehu A
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(5):1162-75. PubMed ID: 24384705
[TBL] [Abstract][Full Text] [Related]
34. Selecting high quality protein structures from diverse conformational ensembles.
Subramani A; DiMaggio PA; Floudas CA
Biophys J; 2009 Sep; 97(6):1728-36. PubMed ID: 19751678
[TBL] [Abstract][Full Text] [Related]
35. A homology/ab initio hybrid algorithm for sampling near-native protein conformations.
Dhingra P; Jayaram B
J Comput Chem; 2013 Aug; 34(22):1925-36. PubMed ID: 23728619
[TBL] [Abstract][Full Text] [Related]
36. Computational modelling of protein interactions: energy minimization for the refinement and scoring of association decoys.
Dibrov A; Myal Y; Leygue E
Acta Biotheor; 2009 Dec; 57(4):419-28. PubMed ID: 19774465
[TBL] [Abstract][Full Text] [Related]
37. An improved protein decoy set for testing energy functions for protein structure prediction.
Tsai J; Bonneau R; Morozov AV; Kuhlman B; Rohl CA; Baker D
Proteins; 2003 Oct; 53(1):76-87. PubMed ID: 12945051
[TBL] [Abstract][Full Text] [Related]
38. Protein structure prediction by all-atom free-energy refinement.
Verma A; Wenzel W
BMC Struct Biol; 2007 Mar; 7():12. PubMed ID: 17371594
[TBL] [Abstract][Full Text] [Related]
39. A reduced protein model with accurate native-structure identification ability.
Betancourt MR
Proteins; 2003 Dec; 53(4):889-907. PubMed ID: 14635131
[TBL] [Abstract][Full Text] [Related]
40. Distance dependent centroid to centroid force fields using high resolution decoys.
Rajgaria R; McAllister SR; Floudas CA
Proteins; 2008 Feb; 70(3):950-70. PubMed ID: 17847088
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]