BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

241 related articles for article (PubMed ID: 33453139)

  • 1. pixy: Unbiased estimation of nucleotide diversity and divergence in the presence of missing data.
    Korunes KL; Samuk K
    Mol Ecol Resour; 2021 May; 21(4):1359-1368. PubMed ID: 33453139
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Average weighted nucleotide diversity is more precise than pixy in estimating the true value of π from sequence sets containing missing data.
    Konopiński MK
    Mol Ecol Resour; 2023 Feb; 23(2):348-354. PubMed ID: 36031871
    [TBL] [Abstract][Full Text] [Related]  

  • 3. vcfr: a package to manipulate and visualize variant call format data in R.
    Knaus BJ; Grünwald NJ
    Mol Ecol Resour; 2017 Jan; 17(1):44-53. PubMed ID: 27401132
    [TBL] [Abstract][Full Text] [Related]  

  • 4. VCF-kit: assorted utilities for the variant call format.
    Cook DE; Andersen EC
    Bioinformatics; 2017 May; 33(10):1581-1582. PubMed ID: 28093408
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GppFst: genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data.
    Adams RH; Schield DR; Card DC; Blackmon H; Castoe TA
    Bioinformatics; 2017 May; 33(9):1414-1415. PubMed ID: 28453670
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accounting for missing data in the estimation of contemporary genetic effective population size (N(e) ).
    Peel D; Waples RS; Macbeth GM; Do C; Ovenden JR
    Mol Ecol Resour; 2013 Mar; 13(2):243-53. PubMed ID: 23280157
    [TBL] [Abstract][Full Text] [Related]  

  • 7. stratag: An r package for manipulating, summarizing and analysing population genetic data.
    Archer FI; Adams PE; Schneiders BB
    Mol Ecol Resour; 2017 Jan; 17(1):5-11. PubMed ID: 27327208
    [TBL] [Abstract][Full Text] [Related]  

  • 8. HLA haplotype frequency estimation for heterogeneous populations using a graph-based imputation algorithm.
    Israeli S; Gragert L; Maiers M; Louzoun Y
    Hum Immunol; 2021 Oct; 82(10):746-757. PubMed ID: 34325951
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FSTest: an efficient tool for cross-population fixation index estimation on variant call format files.
    Vahedi SM; Ardestani SS
    J Genet; 2024; 103():. PubMed ID: 38258299
    [TBL] [Abstract][Full Text] [Related]  

  • 10. re-Searcher: GUI-based bioinformatics tool for simplified genomics data mining of VCF files.
    Karabayev D; Molkenov A; Yerulanuly K; Kabimoldayev I; Daniyarov A; Sharip A; Seisenova A; Zhumadilov Z; Kairov U
    PeerJ; 2021; 9():e11333. PubMed ID: 33987016
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genetic diversity analysis of highly incomplete SNP genotype data with imputations: an empirical assessment.
    Fu YB
    G3 (Bethesda); 2014 Mar; 4(5):891-900. PubMed ID: 24626289
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data.
    Chan AW; Hamblin MT; Jannink JL
    PLoS One; 2016; 11(8):e0160733. PubMed ID: 27537694
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improved VCF normalization for accurate VCF comparison.
    Bayat A; Gaëta B; Ignjatovic A; Parameswaran S
    Bioinformatics; 2017 Apr; 33(7):964-970. PubMed ID: 27993787
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genetic evaluation with major genes and polygenic inheritance when some animals are not genotyped using gene content multiple-trait BLUP.
    Legarra A; Vitezica ZG
    Genet Sel Evol; 2015 Nov; 47():89. PubMed ID: 26576649
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genomewide patterns of variation in genetic diversity are shared among populations, species and higher-order taxa.
    Vijay N; Weissensteiner M; Burri R; Kawakami T; Ellegren H; Wolf JBW
    Mol Ecol; 2017 Aug; 26(16):4284-4295. PubMed ID: 28570015
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A maximum-likelihood method to correct for allelic dropout in microsatellite data with no replicate genotypes.
    Wang C; Schroeder KB; Rosenberg NA
    Genetics; 2012 Oct; 192(2):651-69. PubMed ID: 22851645
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar.
    Garrison E; Kronenberg ZN; Dawson ET; Pedersen BS; Prins P
    PLoS Comput Biol; 2022 May; 18(5):e1009123. PubMed ID: 35639788
    [TBL] [Abstract][Full Text] [Related]  

  • 18. glactools: a command-line toolset for the management of genotype likelihoods and allele counts.
    Renaud G
    Bioinformatics; 2018 Apr; 34(8):1398-1400. PubMed ID: 29186325
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Perfect Phylogeny Problems with Missing Values.
    Kirkpatrick B; Stevens K
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(5):928-41. PubMed ID: 26356864
    [TBL] [Abstract][Full Text] [Related]  

  • 20. genodive version 3.0: Easy-to-use software for the analysis of genetic data of diploids and polyploids.
    Meirmans PG
    Mol Ecol Resour; 2020 Jul; 20(4):1126-1131. PubMed ID: 32061017
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.