These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

202 related articles for article (PubMed ID: 33469973)

  • 21. Pairwise sequence alignment below the twilight zone.
    Blake JD; Cohen FE
    J Mol Biol; 2001 Mar; 307(2):721-35. PubMed ID: 11254392
    [TBL] [Abstract][Full Text] [Related]  

  • 22. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J; Feng JA
    Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
    [TBL] [Abstract][Full Text] [Related]  

  • 23. PON-SC - program for identifying steric clashes caused by amino acid substitutions.
    Čalyševa J; Vihinen M
    BMC Bioinformatics; 2017 Nov; 18(1):531. PubMed ID: 29187139
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Enriching the sequence substitution matrix by structural information.
    Teodorescu O; Galor T; Pillardy J; Elber R
    Proteins; 2004 Jan; 54(1):41-8. PubMed ID: 14705022
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Grouping of amino acids and recognition of protein structurally conserved regions by reduced alphabets of amino acids.
    Li J; Wang W
    Sci China C Life Sci; 2007 Jun; 50(3):392-402. PubMed ID: 17609897
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J; Deremble C; Carbone A
    Proteins; 2007 May; 67(3):695-708. PubMed ID: 17299747
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions.
    Larson SM; Di Nardo AA; Davidson AR
    J Mol Biol; 2000 Oct; 303(3):433-46. PubMed ID: 11031119
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".
    Tripet B; Wagschal K; Lavigne P; Mant CT; Hodges RS
    J Mol Biol; 2000 Jul; 300(2):377-402. PubMed ID: 10873472
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Rheostats, toggles, and neutrals, Oh my! A new framework for understanding how amino acid changes modulate protein function.
    Swint-Kruse L; Fenton AW
    J Biol Chem; 2024 Mar; 300(3):105736. PubMed ID: 38336297
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
    Scheeff ED; Bourne PE
    BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Biological insights from topology independent comparison of protein 3D structures.
    Nguyen MN; Madhusudhan MS
    Nucleic Acids Res; 2011 Aug; 39(14):e94. PubMed ID: 21596786
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.
    Melo F; Marti-Renom MA
    Proteins; 2006 Jun; 63(4):986-95. PubMed ID: 16506243
    [TBL] [Abstract][Full Text] [Related]  

  • 33. The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.
    Yu YK; Altschul SF
    Bioinformatics; 2005 Apr; 21(7):902-11. PubMed ID: 15509610
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Functional restraints on the patterns of amino acid substitutions: application to sequence-structure homology recognition.
    Chelliah V; Blundell T; Mizuguchi K
    Proteins; 2005 Dec; 61(4):722-31. PubMed ID: 16193489
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Improving the quality of twilight-zone alignments.
    Jaroszewski L; Rychlewski L; Godzik A
    Protein Sci; 2000 Aug; 9(8):1487-96. PubMed ID: 10975570
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Alignment of helical membrane protein sequences using AlignMe.
    Stamm M; Staritzbichler R; Khafizov K; Forrest LR
    PLoS One; 2013; 8(3):e57731. PubMed ID: 23469223
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Empirical models for substitution in ribosomal RNA.
    Smith AD; Lui TW; Tillier ER
    Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Evolutionary models of amino acid substitutions based on the tertiary structure of their neighborhoods.
    Primetis E; Chavlis S; Pavlidis P
    Proteins; 2021 Nov; 89(11):1565-1576. PubMed ID: 34278605
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
    Sauder JM; Arthur JW; Dunbrack RL
    Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins.
    Reddy BV; Li WW; Shindyalov IN; Bourne PE
    Proteins; 2001 Feb; 42(2):148-63. PubMed ID: 11119639
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.