These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

134 related articles for article (PubMed ID: 33471337)

  • 1. Prediction of Rice Transcription Start Sites Using TransPrise: A Novel Machine Learning Approach.
    Pachganov S; Murtazalieva K; Zarubin A; Taran T; Chartier D; Tatarinova TV
    Methods Mol Biol; 2021; 2238():261-274. PubMed ID: 33471337
    [TBL] [Abstract][Full Text] [Related]  

  • 2. TransPrise: a novel machine learning approach for eukaryotic promoter prediction.
    Pachganov S; Murtazalieva K; Zarubin A; Sokolov D; Chartier DR; Tatarinova TV
    PeerJ; 2019; 7():e7990. PubMed ID: 31695967
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TSSPlant: a new tool for prediction of plant Pol II promoters.
    Shahmuradov IA; Umarov RK; Solovyev VV
    Nucleic Acids Res; 2017 May; 45(8):e65. PubMed ID: 28082394
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TSSFinder-fast and accurate ab initio prediction of the core promoter in eukaryotic genomes.
    de Medeiros Oliveira M; Bonadio I; Lie de Melo A; Mendes Souza G; Durham AM
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34050351
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GC-compositional strand bias around transcription start sites in plants and fungi.
    Fujimori S; Washio T; Tomita M
    BMC Genomics; 2005 Feb; 6():26. PubMed ID: 15733327
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing.
    Watanabe KA; Homayouni A; Tufano T; Lopez J; Ringler P; Rushton P; Shen QJ
    DNA Res; 2015 Oct; 22(5):319-29. PubMed ID: 26341416
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation.
    Čuklina J; Hahn J; Imakaev M; Omasits U; Förstner KU; Ljubimov N; Goebel M; Pessi G; Fischer HM; Ahrens CH; Gelfand MS; Evguenieva-Hackenberg E
    BMC Genomics; 2016 Apr; 17():302. PubMed ID: 27107716
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TIPR: transcription initiation pattern recognition on a genome scale.
    Morton T; Wong WK; Megraw M
    Bioinformatics; 2015 Dec; 31(23):3725-32. PubMed ID: 26254489
    [TBL] [Abstract][Full Text] [Related]  

  • 9. iDNA6mA-Rice-DL: A local web server for identifying DNA N6-methyladenine sites in rice genome by deep learning method.
    He S; Kong L; Chen J
    J Bioinform Comput Biol; 2021 Oct; 19(5):2150019. PubMed ID: 34291710
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Characterization of the gene for pyruvate,orthophosphate dikinase from rice, a C3 plant, and a comparison of structure and expression between C3 and C4 genes for this protein.
    Imaizumi N; Ku MS; Ishihara K; Samejima M; Kaneko S; Matsuoka M
    Plant Mol Biol; 1997 Jul; 34(5):701-16. PubMed ID: 9278162
    [TBL] [Abstract][Full Text] [Related]  

  • 11. EnsemPro: an ensemble approach to predicting transcription start sites in human genomic DNA sequences.
    Won HH; Kim MJ; Kim S; Kim JW
    Genomics; 2008 Mar; 91(3):259-66. PubMed ID: 18164178
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice.
    Fang Y; Chen L; Lin K; Feng Y; Zhang P; Pan X; Sanders J; Wu Y; Wang XE; Su Z; Chen C; Wei H; Zhang W
    Genome Res; 2019 Aug; 29(8):1287-1297. PubMed ID: 31262943
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GMStool: GWAS-based marker selection tool for genomic prediction from genomic data.
    Jeong S; Kim JY; Kim N
    Sci Rep; 2020 Nov; 10(1):19653. PubMed ID: 33184432
    [TBL] [Abstract][Full Text] [Related]  

  • 14. In silico analysis of motifs in promoters of differentially expressed genes in rice (Oryza sativa L.) under anoxia.
    Kumar A; Smita S; Sahu N; Sharma V; Shankaracharya ; Vidyarthi A; Pandey DM
    Int J Bioinform Res Appl; 2009; 5(5):525-47. PubMed ID: 19778868
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RiceRBP: a database of experimentally identified RNA-binding proteins in Oryza sativa L.
    Morris RT; Doroshenk KA; Crofts AJ; Lewis N; Okita TW; Wyrick JJ
    Plant Sci; 2011 Feb; 180(2):204-11. PubMed ID: 21421362
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MCRiceRepGP: a framework for the identification of genes associated with sexual reproduction in rice.
    Golicz AA; Bhalla PL; Singh MB
    Plant J; 2018 Oct; 96(1):188-202. PubMed ID: 29979827
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Identification and Downstream Analyses of Domains Amplified in Plant Genomes: The Case of StAR-Related Lipid Transfer (START) Domains in Rice.
    Mahtha SK; Purama RK; Kumari R; Yadav G
    Methods Mol Biol; 2021; 2238():325-338. PubMed ID: 33471342
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A long leader intron of the Ostub16 rice beta-tubulin gene is required for high-level gene expression and can autonomously promote transcription both in vivo and in vitro.
    Morello L; Bardini M; Sala F; Breviario D
    Plant J; 2002 Jan; 29(1):33-44. PubMed ID: 12060225
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RiceGAAS: an automated annotation system and database for rice genome sequence.
    Sakata K; Nagamura Y; Numa H; Antonio BA; Nagasaki H; Idonuma A; Watanabe W; Shimizu Y; Horiuchi I; Matsumoto T; Sasaki T; Higo K
    Nucleic Acids Res; 2002 Jan; 30(1):98-102. PubMed ID: 11752265
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.
    Stolc V; Li L; Wang X; Li X; Su N; Tongprasit W; Han B; Xue Y; Li J; Snyder M; Gerstein M; Wang J; Deng XW
    Plant Mol Biol; 2005 Sep; 59(1):137-49. PubMed ID: 16217608
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.