These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
127 related articles for article (PubMed ID: 33472569)
1. Transformation of FASTA files into feature vectors for unsupervised compression of short reads databases. Tang T; Li J J Bioinform Comput Biol; 2021 Feb; 19(1):2050048. PubMed ID: 33472569 [TBL] [Abstract][Full Text] [Related]
2. Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression. Liu Y; Yu Z; Dinger ME; Li J Bioinformatics; 2019 Jun; 35(12):2066-2074. PubMed ID: 30407482 [TBL] [Abstract][Full Text] [Related]
3. Simultaneous compression of multiple error-corrected short-read sets for faster data transmission and better de novo assemblies. Tang T; Hutvagner G; Wang W; Li J Brief Funct Genomics; 2022 Sep; 21(5):387-398. PubMed ID: 35848773 [TBL] [Abstract][Full Text] [Related]
4. Hamming-shifting graph of genomic short reads: Efficient construction and its application for compression. Liu Y; Li J PLoS Comput Biol; 2021 Jul; 17(7):e1009229. PubMed ID: 34280186 [TBL] [Abstract][Full Text] [Related]
6. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis. Chandak S; Tatwawadi K; Weissman T Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237 [TBL] [Abstract][Full Text] [Related]
7. An efficient classification algorithm for NGS data based on text similarity. Liao X; Liao X; Zhu W; Fang L; Chen X Genet Res (Camb); 2018 Sep; 100():e8. PubMed ID: 30221607 [TBL] [Abstract][Full Text] [Related]
8. HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads. Li P; Jiang X; Wang S; Kim J; Xiong H; Ohno-Machado L J Am Med Inform Assoc; 2014; 21(2):363-73. PubMed ID: 24368726 [TBL] [Abstract][Full Text] [Related]
9. A randomized optimal k-mer indexing approach for efficient parallel genome sequence compression. Roy S; Mukhopadhyay A Gene; 2024 May; 907():148235. PubMed ID: 38342250 [TBL] [Abstract][Full Text] [Related]
15. PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering. Sun H; Zheng Y; Xie H; Ma H; Liu X; Wang G BMC Bioinformatics; 2023 Nov; 24(1):454. PubMed ID: 38036969 [TBL] [Abstract][Full Text] [Related]
16. Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. Cox AJ; Bauer MJ; Jakobi T; Rosone G Bioinformatics; 2012 Jun; 28(11):1415-9. PubMed ID: 22556365 [TBL] [Abstract][Full Text] [Related]