BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

217 related articles for article (PubMed ID: 33486547)

  • 1. Ancestral Sequence Reconstruction: From Chemical Paleogenetics to Maximum Likelihood Algorithms and Beyond.
    Selberg AGA; Gaucher EA; Liberles DA
    J Mol Evol; 2021 Apr; 89(3):157-164. PubMed ID: 33486547
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A practical algorithm for estimation of the maximum likelihood ancestral reconstruction error.
    Hickey G; Blanchette M
    Pac Symp Biocomput; 2010; ():31-42. PubMed ID: 19908355
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ARPIP: Ancestral Sequence Reconstruction with Insertions and Deletions under the Poisson Indel Process.
    Jowkar G; Pečerska J; Maiolo M; Gil M; Anisimova M
    Syst Biol; 2023 Jun; 72(2):307-318. PubMed ID: 35866991
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability.
    Arenas M; Weber CC; Liberles DA; Bastolla U
    Syst Biol; 2017 Nov; 66(6):1054-1064. PubMed ID: 28057858
    [TBL] [Abstract][Full Text] [Related]  

  • 5. FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction.
    Musil M; Khan RT; Beier A; Stourac J; Konegger H; Damborsky J; Bednar D
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33346815
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconstruction of ancestral protein sequences and its applications.
    Cai W; Pei J; Grishin NV
    BMC Evol Biol; 2004 Sep; 4():33. PubMed ID: 15377393
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Ancestral maximum likelihood of evolutionary trees is hard.
    Addario-Berry L; Chor B; Hallett M; Lagergren J; Panconesi A; Wareham T
    J Bioinform Comput Biol; 2004 Jun; 2(2):257-71. PubMed ID: 15297981
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Reconstructing ancestral genomic sequences by co-evolution: formal definitions, computational issues, and biological examples.
    Tuller T; Birin H; Kupiec M; Ruppin E
    J Comput Biol; 2010 Sep; 17(9):1327-44. PubMed ID: 20874411
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evolutionary triplet models of structured RNA.
    Bradley RK; Holmes I
    PLoS Comput Biol; 2009 Aug; 5(8):e1000483. PubMed ID: 19714212
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Ancestral sequence alignment under optimal conditions.
    Hudek AK; Brown DG
    BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Probabilistic reconstruction of ancestral protein sequences.
    Koshi JM; Goldstein RA
    J Mol Evol; 1996 Feb; 42(2):313-20. PubMed ID: 8919883
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Exploring the past and the future of protein evolution with ancestral sequence reconstruction: the 'retro' approach to protein engineering.
    Gumulya Y; Gillam EM
    Biochem J; 2017 Jan; 474(1):1-19. PubMed ID: 28008088
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Assessing the accuracy of ancestral protein reconstruction methods.
    Williams PD; Pollock DD; Blackburne BP; Goldstein RA
    PLoS Comput Biol; 2006 Jun; 2(6):e69. PubMed ID: 16789817
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Statistically consistent and computationally efficient inference of ancestral DNA sequences in the TKF91 model under dense taxon sampling.
    Fan WT; Roch S
    Bull Math Biol; 2020 Jan; 82(2):21. PubMed ID: 31970502
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Reconstruction of ancestral genomic sequences using likelihood.
    Elias I; Tuller T
    J Comput Biol; 2007 Mar; 14(2):216-37. PubMed ID: 17456016
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ancestral state reconstruction with large numbers of sequences and edge-length estimation.
    Ho LST; Susko E
    J Math Biol; 2022 Feb; 84(4):21. PubMed ID: 35188616
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Toward extracting all phylogenetic information from matrices of evolutionary distances.
    Roch S
    Science; 2010 Mar; 327(5971):1376-9. PubMed ID: 20223986
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Consequences of Substitution Model Selection on Protein Ancestral Sequence Reconstruction.
    Del Amparo R; Arenas M
    Mol Biol Evol; 2022 Jul; 39(7):. PubMed ID: 35789388
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A fast algorithm for joint reconstruction of ancestral amino acid sequences.
    Pupko T; Pe'er I; Shamir R; Graur D
    Mol Biol Evol; 2000 Jun; 17(6):890-6. PubMed ID: 10833195
    [TBL] [Abstract][Full Text] [Related]  

  • 20. [Enzyme ancestral sequence reconstruction and directed evolution].
    Zhang K; Dai Y; Sun J; Lu J; Chen K
    Sheng Wu Gong Cheng Xue Bao; 2021 Dec; 37(12):4187-4200. PubMed ID: 34984867
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.